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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4249 1nh2_A)  (  133 1ais_A)     0.9999   0.9999   1.6068 (   0    8   15)   0     0.9999   0.9999    6   6
( 4249 1nh2_A)  ( 1211 1em2_A)     0.0999   0.0997  10.9177 (   2    2    6)   0     0.6639   0.3076    6  13
( 4249 1nh2_A)  ( 1396 1f46_A)     0.9974   0.6663   5.1140 (   0    8   15)   0     0.9974   0.6663    6   9
( 4249 1nh2_A)  ( 1558 1fm4_A)     0.8383   0.5816   6.3655 (   1   10   15)   0     0.8383   0.5816    6  10
( 4249 1nh2_A)  ( 3050 1jss_A)     0.8276   0.3845   7.8419 (   0    6   10)   0     0.8276   0.3845    6  13
( 4249 1nh2_A)  ( 3262 1kcm_A)     0.6646   0.2500   8.0615 (   0    3    6)   0     0.8293   0.3125    6  16
( 4249 1nh2_A)  ( 3673 1ln1_A)     0.8296   0.3333   7.0519 (   0    6   10)   0     0.8296   0.3333    6  15
( 4249 1nh2_A)  ( 3819 1m3q_A)     0.9933   0.6658   6.4965 (   0   11   15)   0     0.9933   0.6658    6   9
( 4249 1nh2_A)  ( 4002 1mpg_A)     0.9906   0.5993   7.0778 (   0   11   15)   0     0.9906   0.5993    6  10
( 4249 1nh2_A)  ( 4248 1nh2_A)     0.8409   0.7002   2.2155 (   1   10   15)   0     0.8409   0.7002    6   8
( 4249 1nh2_A)  ( 4249 1nh2_A)     1.0000   1.0000   0.0000 (   0   11   15)   0     1.0000   1.0000    6   6
( 4249 1nh2_A)  ( 4542 1o7n_A)     0.9913   0.2609   6.9474 (   0    9   15)   0     0.9913   0.2609    6  23
( 4249 1nh2_A)  ( 4904 1p5d_X)     0.9836   0.8494   8.1819 (   0    9   15)   0     0.9836   0.8494    6   7
( 4249 1nh2_A)  ( 5264 1q9u_A)     0.1996   0.1957  10.3975 (   1    2    6)   0     0.1996   0.1957    6  11
( 4249 1nh2_A)  ( 6046 1ul7_A)     0.8330   0.8330   3.9400 (   0    5   10)   0     0.8330   0.8330    6   6
( 4249 1nh2_A)  ( 6196 1v8c_A)     0.9866   0.8509   7.7620 (   0    8   15)   0     0.9866   0.8509    6   7
( 4249 1nh2_A)  ( 6284 1vjh_A)     0.9967   0.7492   5.4480 (   0    9   15)   0     0.9967   0.7492    6   8
( 4249 1nh2_A)  ( 6588 3pmg_A)     0.7330   0.6038   6.1615 (   1    8   15)   0     0.7330   0.6038    6   9

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