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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3977 1mmi_A)  (  230 1axc_A)     0.9978   0.8324   2.4243 (   1   33   45)   0     0.9978   0.8324   10  12
( 3977 1mmi_A)  (  231 1axc_A)     0.9978   0.9077   2.3865 (   1   33   45)   0     0.9978   0.9077   10  11
( 3977 1mmi_A)  (  309 1b77_A)     0.8998   0.9997   3.0692 (   0   25   36)   0     0.8998   0.9997   10   9
( 3977 1mmi_A)  (  310 1b77_A)     0.8971   0.9950   3.0167 (   1   27   36)   0     0.8998   0.9997   10   9
( 3977 1mmi_A)  (  883 1dml_A)     0.8996   0.7498   3.7112 (   0   25   36)   0     0.8996   0.7498   10  12
( 3977 1mmi_A)  (  884 1dml_A)     0.9973   0.9074   2.9970 (   1   32   45)   0     0.9974   0.9075   10  11
( 3977 1mmi_A)  ( 2675 1iz5_A)     0.9978   0.9077   2.1672 (   1   33   45)   0     0.9978   0.9077   10  11
( 3977 1mmi_A)  ( 2676 1iz5_A)     0.9980   0.9078   2.4486 (   1   34   45)   0     0.9980   0.9078   10  11
( 3977 1mmi_A)  ( 3977 1mmi_A)     1.0000   1.0000   0.0000 (   0   34   45)   0     1.0000   1.0000   10  10
( 3977 1mmi_A)  ( 3978 1mmi_A)     0.9971   0.9971   2.5864 (   1   31   45)   0     0.9971   0.9971   10  10
( 3977 1mmi_A)  ( 3979 1mmi_A)     0.9976   0.9976   1.8954 (   1   32   45)   0     0.9976   0.9976   10  10
( 3977 1mmi_A)  ( 5047 1plq  )     0.9976   0.9976   1.8463 (   1   32   45)   0     0.9976   0.9976   10  10
( 3977 1mmi_A)  ( 5048 1plq  )     0.9978   0.9077   2.4135 (   1   33   45)   0     0.9978   0.9077   10  11
( 3977 1mmi_A)  ( 5717 1rwz_A)     0.9981   0.9079   1.5652 (   1   34   45)   0     0.9981   0.9079   10  11
( 3977 1mmi_A)  ( 5718 1rwz_A)     0.9980   0.9980   2.2984 (   1   34   45)   0     0.9981   0.9981   10  10

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