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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5048 1plq  )  (  230 1axc_A)     0.9999   0.9166   1.9643 (   0   39   55)   0     0.9999   0.9166   11  12
( 5048 1plq  )  (  231 1axc_A)     0.9091   0.9091   1.0882 (   0   33   45)   0     0.9091   0.9091   11  11
( 5048 1plq  )  (  309 1b77_A)     0.8181   0.9996   3.0997 (   0   25   36)   0     0.8181   0.9998   11   9
( 5048 1plq  )  (  310 1b77_A)     0.8179   0.9993   3.7010 (   0   27   36)   0     0.8180   0.9996   11   9
( 5048 1plq  )  (  883 1dml_A)     0.9064   0.8316   4.3094 (   1   30   45)   0     0.9064   0.8316   11  12
( 5048 1plq  )  (  884 1dml_A)     0.9985   0.9985   3.3673 (   1   40   55)   0     0.9985   0.9985   11  11
( 5048 1plq  )  ( 2675 1iz5_A)     0.9999   0.9999   2.1410 (   0   40   55)   0     0.9999   0.9999   11  11
( 5048 1plq  )  ( 2676 1iz5_A)     0.9999   0.9999   1.2214 (   0   41   55)   0     0.9999   0.9999   11  11
( 5048 1plq  )  ( 3977 1mmi_A)     0.9077   0.9978   2.4135 (   1   33   45)   0     0.9077   0.9978   11  10
( 5048 1plq  )  ( 3978 1mmi_A)     0.9087   0.9994   3.5309 (   0   30   45)   0     0.9088   0.9995   11  10
( 5048 1plq  )  ( 3979 1mmi_A)     0.9091   0.9999   1.5440 (   0   32   45)   0     0.9091   0.9999   11  10
( 5048 1plq  )  ( 5047 1plq  )     0.9091   0.9999   1.9376 (   0   31   45)   0     0.9091   0.9999   11  10
( 5048 1plq  )  ( 5048 1plq  )     1.0000   1.0000   0.0000 (   0   42   55)   0     1.0000   1.0000   11  11
( 5048 1plq  )  ( 5717 1rwz_A)     0.9999   0.9999   1.8918 (   0   40   55)   0     0.9999   0.9999   11  11
( 5048 1plq  )  ( 5718 1rwz_A)     0.9091   0.9999   1.2190 (   0   33   45)   0     0.9091   0.9999   11  10

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