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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2904 1jj2_E)  ( 2904 1jj2_E)     1.0000   1.0000   0.0000 (   0    9   21)   0     1.0000   1.0000    7   7
( 2904 1jj2_E)  ( 2905 1jj2_E)     0.5682   0.4983  10.8742 (   0    0    6)   0     0.7119   0.6238    7   8
( 2904 1jj2_E)  ( 5670 1rl6_A)     0.8571   0.9999   0.6298 (   0    6   15)   0     0.8571   0.9999    7   6
( 2904 1jj2_E)  ( 5671 1rl6_A)     0.7933   0.7459   2.8901 (   1    9   21)   0     0.7933   0.7459    7   8

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