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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 1385 1f3m_C) ( 7 1a06 ) 0.7777 0.7777 2.7092 ( 1 57 91) 0 0.7777 0.7777 18 18
( 1385 1f3m_C) ( 608 1cja_A) 0.4177 0.4177 5.4533 ( 5 23 45) 0 0.4177 0.4177 18 18
( 1385 1f3m_C) ( 675 1csn ) 0.8213 0.9163 4.1476 ( 4 68 105) 0 0.8213 0.9163 18 16
( 1385 1f3m_C) ( 1070 1e7u_A) 0.5514 0.4742 8.0268 ( 2 28 45) 0 0.5788 0.5080 18 21
( 1385 1f3m_C) ( 1385 1f3m_C) 1.0000 1.0000 0.0000 ( 0 122 153) 0 1.0000 1.0000 18 18
( 1385 1f3m_C) ( 1498 1fgk_A) 0.7771 0.9316 2.8106 ( 2 65 91) 0 0.7771 0.9316 18 15
( 1385 1f3m_C) ( 1563 1fmk ) 0.4444 0.4999 5.0595 ( 0 19 28) 0 0.6999 0.7740 18 16
( 1385 1f3m_C) ( 2018 1gz8_A) 0.8513 0.8513 3.1882 ( 6 81 120) 0 0.8513 0.8513 18 18
( 1385 1f3m_C) ( 2439 1ia9_A) 0.2778 0.2778 6.7319 ( 0 8 10) 0 0.3776 0.3776 18 18
( 1385 1f3m_C) ( 2446 1ias_A) 0.8307 0.7484 3.9506 ( 3 77 105) 0 0.8307 0.7484 18 20
( 1385 1f3m_C) ( 2756 1j7l_A) 0.5599 0.5383 5.1965 ( 5 38 55) 0 0.6239 0.5979 18 19
( 1385 1f3m_C) ( 2947 1jks_A) 0.8326 0.9362 3.3466 ( 2 74 105) 0 0.8326 0.9362 18 16
( 1385 1f3m_C) ( 3143 1k2p_A) 0.7769 0.9968 2.5119 ( 2 60 91) 0 0.7769 0.9968 18 14
( 1385 1f3m_C) ( 3379 1kob_A) 0.8089 0.7026 3.1023 ( 5 70 105) 0 0.8089 0.7026 18 21
( 1385 1f3m_C) ( 3778 1m14_A) 0.7906 0.9058 3.8882 ( 6 72 105) 0 0.7906 0.9058 18 15
( 1385 1f3m_C) ( 3808 1m2r_A) 0.7046 0.6706 3.6100 ( 4 51 78) 0 0.7046 0.6706 18 19
( 1385 1f3m_C) ( 4001 1mp8_A) 0.7886 0.9017 3.6403 ( 6 71 105) 0 0.7886 0.9030 18 15
( 1385 1f3m_C) ( 4008 1mq4_A) 0.8154 0.8588 2.9356 ( 5 76 105) 0 0.8154 0.8588 18 17
( 1385 1f3m_C) ( 4200 1nd4_A) 0.3333 0.3529 4.2132 ( 0 7 15) 0 0.6583 0.6948 18 17
( 1385 1f3m_C) ( 4408 1nvr_A) 0.7767 0.8730 3.2808 ( 2 58 91) 0 0.7767 0.8730 18 16
( 1385 1f3m_C) ( 4411 1nw1_A) 0.2760 0.2266 9.4131 ( 1 7 10) 0 0.3526 0.3192 18 22
( 1385 1f3m_C) ( 4428 1nxk_A) 0.7649 0.7649 3.5701 ( 7 73 105) 0 0.7649 0.7649 18 18
( 1385 1f3m_C) ( 4511 1o6l_A) 0.7776 0.8233 3.4151 ( 1 61 91) 0 0.7776 0.8233 18 17
( 1385 1f3m_C) ( 4519 1o6y_A) 0.8241 0.9211 4.1349 ( 4 73 105) 0 0.8241 0.9211 18 16
( 1385 1f3m_C) ( 4717 1omw_A) 0.4444 0.4210 3.8285 ( 0 20 28) 0 0.8325 0.7888 18 19
( 1385 1f3m_C) ( 4889 1p4o_A) 0.8122 0.8547 3.9655 ( 5 73 105) 0 0.8122 0.8547 18 17
( 1385 1f3m_C) ( 5013 1phk ) 0.8295 0.9307 3.5614 ( 3 69 105) 0 0.8295 0.9307 18 16
( 1385 1f3m_C) ( 5201 1q41_A) 0.8586 0.7473 3.2078 ( 6 86 120) 0 0.8586 0.7473 18 21
( 1385 1f3m_C) ( 5248 1q8y_A) 0.8697 0.7885 4.7413 ( 5 82 120) 0 0.8697 0.7885 18 20
( 1385 1f3m_C) ( 5510 1r0p_A) 0.8786 0.9276 3.8875 ( 4 77 120) 0 0.8786 0.9276 18 17
( 1385 1f3m_C) ( 5539 1r3c_A) 0.2777 0.2273 9.5290 ( 0 5 10) 0 0.8598 0.7377 18 22
( 1385 1f3m_C) ( 5609 1rdq_E) 0.7777 0.7777 2.7859 ( 0 63 91) 0 0.7777 0.7777 18 18
( 1385 1f3m_C) ( 5917 1tki_A) 0.8075 0.7344 3.4355 ( 5 69 105) 0 0.8075 0.7344 18 20
( 1385 1f3m_C) ( 6112 1uu3_A) 0.7649 0.7649 3.3525 ( 9 84 120) 0 0.7649 0.7649 18 18
( 1385 1f3m_C) ( 6130 1uwh_A) 0.8332 0.9373 2.5768 ( 1 71 105) 0 0.8332 0.9373 18 16
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