------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1563 1fmk ) ( 7 1a06 ) 0.9355 0.8322 3.9796 ( 2 69 105) 0 0.9355 0.8322 16 18 ( 1563 1fmk ) ( 608 1cja_A) 0.5000 0.4809 5.1653 ( 7 38 55) 0 0.5000 0.4809 16 18 ( 1563 1fmk ) ( 675 1csn ) 0.9371 0.9371 3.3027 ( 1 80 105) 0 0.9371 0.9371 16 16 ( 1563 1fmk ) ( 1070 1e7u_A) 0.3721 0.2850 7.3383 ( 1 9 15) 0 0.7020 0.5577 16 21 ( 1563 1fmk ) ( 1385 1f3m_C) 0.4999 0.4444 5.0595 ( 0 19 28) 0 0.7740 0.6999 16 18 ( 1563 1fmk ) ( 1498 1fgk_A) 0.9372 0.9996 3.1983 ( 1 84 105) 0 0.9372 0.9996 16 15 ( 1563 1fmk ) ( 1563 1fmk ) 1.0000 1.0000 0.0000 ( 0 98 120) 0 1.0000 1.0000 16 16 ( 1563 1fmk ) ( 2018 1gz8_A) 0.9373 0.8332 2.7194 ( 1 74 105) 0 0.9373 0.8332 16 18 ( 1563 1fmk ) ( 2439 1ia9_A) 0.5153 0.4717 6.7874 ( 4 28 36) 0 0.5153 0.4717 16 18 ( 1563 1fmk ) ( 2446 1ias_A) 0.9365 0.7497 2.8825 ( 2 78 105) 0 0.9365 0.7497 16 20 ( 1563 1fmk ) ( 2756 1j7l_A) 0.6962 0.6067 5.1624 ( 5 49 66) 0 0.6999 0.6086 16 19 ( 1563 1fmk ) ( 2947 1jks_A) 0.9373 0.9373 2.5235 ( 1 77 105) 0 0.9373 0.9373 16 16 ( 1563 1fmk ) ( 3143 1k2p_A) 0.8704 0.9912 2.0532 ( 3 69 91) 0 0.8704 0.9912 16 14 ( 1563 1fmk ) ( 3379 1kob_A) 0.9327 0.7130 3.0287 ( 3 75 105) 0 0.9327 0.7130 16 21 ( 1563 1fmk ) ( 3778 1m14_A) 0.9330 0.9938 2.9093 ( 3 76 105) 0 0.9330 0.9938 16 15 ( 1563 1fmk ) ( 3808 1m2r_A) 0.9331 0.7876 3.1342 ( 3 77 105) 0 0.9331 0.7876 16 19 ( 1563 1fmk ) ( 4001 1mp8_A) 0.9366 0.9987 3.0512 ( 2 81 105) 0 0.9366 0.9987 16 15 ( 1563 1fmk ) ( 4008 1mq4_A) 0.9368 0.8818 2.5764 ( 2 83 105) 0 0.9368 0.8818 16 17 ( 1563 1fmk ) ( 4200 1nd4_A) 0.3750 0.3529 6.4640 ( 0 8 15) 0 0.7419 0.6999 16 17 ( 1563 1fmk ) ( 4408 1nvr_A) 0.8732 0.8732 4.6093 ( 2 68 91) 0 0.8732 0.8732 16 16 ( 1563 1fmk ) ( 4411 1nw1_A) 0.2763 0.2181 10.3181 ( 2 7 10) 0 0.6772 0.5534 16 22 ( 1563 1fmk ) ( 4428 1nxk_A) 0.3039 0.2869 5.1869 ( 2 7 15) 0 0.5643 0.5537 16 18 ( 1563 1fmk ) ( 4511 1o6l_A) 0.8748 0.8234 2.9538 ( 1 66 91) 0 0.8748 0.8234 16 17 ( 1563 1fmk ) ( 4519 1o6y_A) 0.9339 0.9339 2.8382 ( 3 81 105) 0 0.9339 0.9339 16 16 ( 1563 1fmk ) ( 4717 1omw_A) 0.8747 0.7367 3.3776 ( 1 72 91) 0 0.8747 0.7367 16 19 ( 1563 1fmk ) ( 4889 1p4o_A) 0.9368 0.8819 3.8802 ( 1 79 105) 0 0.9368 0.8819 16 17 ( 1563 1fmk ) ( 5013 1phk ) 0.9365 0.9365 3.0030 ( 2 79 105) 0 0.9365 0.9365 16 16 ( 1563 1fmk ) ( 5201 1q41_A) 0.9360 0.7139 3.7714 ( 2 75 105) 0 0.9360 0.7139 16 21 ( 1563 1fmk ) ( 5248 1q8y_A) 0.9364 0.7496 4.4629 ( 1 76 105) 0 0.9364 0.7496 16 20 ( 1563 1fmk ) ( 5510 1r0p_A) 0.9362 0.8814 3.4563 ( 2 76 105) 0 0.9362 0.8814 16 17 ( 1563 1fmk ) ( 5539 1r3c_A) 0.9303 0.6803 3.6533 ( 3 68 105) 0 0.9303 0.6803 16 22 ( 1563 1fmk ) ( 5609 1rdq_E) 0.9373 0.8332 2.8987 ( 1 78 105) 0 0.9373 0.8332 16 18 ( 1563 1fmk ) ( 5917 1tki_A) 0.9224 0.7449 3.1664 ( 4 74 105) 0 0.9224 0.7449 16 20 ( 1563 1fmk ) ( 6112 1uu3_A) 0.9364 0.8327 3.1153 ( 2 77 105) 0 0.9364 0.8327 16 18 ( 1563 1fmk ) ( 6130 1uwh_A) 0.9327 0.9327 2.8615 ( 3 75 105) 0 0.9327 0.9327 16 16 -------------------------------------------------------------------------------------------------------------------------