------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3143 1k2p_A) ( 7 1a06 ) 0.9995 0.7776 2.8010 ( 1 56 91) 0 0.9995 0.7776 14 18 ( 3143 1k2p_A) ( 608 1cja_A) 0.3575 0.3441 5.0285 ( 6 22 36) 0 0.4994 0.3887 14 18 ( 3143 1k2p_A) ( 675 1csn ) 0.9971 0.8735 3.4604 ( 2 64 91) 0 0.9971 0.8735 14 16 ( 3143 1k2p_A) ( 1070 1e7u_A) 0.2857 0.1905 5.5054 ( 0 3 6) 0 0.4337 0.3885 14 21 ( 3143 1k2p_A) ( 1385 1f3m_C) 0.9968 0.7769 2.5119 ( 2 60 91) 0 0.9968 0.7769 14 18 ( 3143 1k2p_A) ( 1498 1fgk_A) 0.9980 0.9320 2.9627 ( 2 70 91) 0 0.9980 0.9320 14 15 ( 3143 1k2p_A) ( 1563 1fmk ) 0.9912 0.8704 2.0532 ( 3 69 91) 0 0.9912 0.8704 14 16 ( 3143 1k2p_A) ( 2018 1gz8_A) 0.9858 0.7737 2.0794 ( 3 61 91) 0 0.9858 0.7737 14 18 ( 3143 1k2p_A) ( 2439 1ia9_A) 0.5211 0.4279 6.1101 ( 3 21 28) 0 0.5211 0.4279 14 18 ( 3143 1k2p_A) ( 2446 1ias_A) 0.9995 0.6999 3.0071 ( 1 64 91) 0 0.9995 0.6999 14 20 ( 3143 1k2p_A) ( 2756 1j7l_A) 0.3571 0.2631 8.0176 ( 0 6 10) 0 0.6492 0.5383 14 19 ( 3143 1k2p_A) ( 2947 1jks_A) 0.9976 0.8737 2.1290 ( 2 64 91) 0 0.9976 0.8737 14 16 ( 3143 1k2p_A) ( 3143 1k2p_A) 1.0000 1.0000 0.0000 ( 0 71 91) 0 1.0000 1.0000 14 14 ( 3143 1k2p_A) ( 3379 1kob_A) 0.9998 0.6666 2.1292 ( 1 63 91) 0 0.9998 0.6666 14 21 ( 3143 1k2p_A) ( 3778 1m14_A) 0.9997 0.9331 2.4750 ( 1 63 91) 0 0.9997 0.9331 14 15 ( 3143 1k2p_A) ( 3808 1m2r_A) 0.8262 0.6851 2.5623 ( 6 58 91) 0 0.8262 0.6851 14 19 ( 3143 1k2p_A) ( 4001 1mp8_A) 0.9905 0.9266 2.8578 ( 3 68 91) 0 0.9905 0.9266 14 15 ( 3143 1k2p_A) ( 4008 1mq4_A) 0.9906 0.8199 2.5069 ( 3 68 91) 0 0.9906 0.8199 14 17 ( 3143 1k2p_A) ( 4200 1nd4_A) 0.3503 0.3446 5.3501 ( 9 32 45) 0 0.7794 0.6446 14 17 ( 3143 1k2p_A) ( 4408 1nvr_A) 0.9252 0.8107 2.9211 ( 2 54 78) 0 0.9252 0.8107 14 16 ( 3143 1k2p_A) ( 4411 1nw1_A) 0.2972 0.2181 9.4875 ( 2 7 10) 0 0.3569 0.2872 14 22 ( 3143 1k2p_A) ( 4428 1nxk_A) 0.9283 0.7222 3.1102 ( 0 54 78) 0 0.9283 0.7222 14 18 ( 3143 1k2p_A) ( 4511 1o6l_A) 0.9282 0.7646 2.6118 ( 1 54 78) 0 0.9282 0.7646 14 17 ( 3143 1k2p_A) ( 4519 1o6y_A) 0.9996 0.8748 2.9117 ( 1 67 91) 0 0.9996 0.8748 14 16 ( 3143 1k2p_A) ( 4717 1omw_A) 0.9282 0.6841 2.9383 ( 1 59 78) 0 0.9282 0.6841 14 19 ( 3143 1k2p_A) ( 4889 1p4o_A) 0.9970 0.8224 3.5700 ( 2 64 91) 0 0.9970 0.8224 14 17 ( 3143 1k2p_A) ( 5013 1phk ) 0.9977 0.8738 2.6499 ( 2 66 91) 0 0.9977 0.8738 14 16 ( 3143 1k2p_A) ( 5201 1q41_A) 0.9583 0.6607 2.8152 ( 4 61 91) 0 0.9583 0.6607 14 21 ( 3143 1k2p_A) ( 5248 1q8y_A) 0.9958 0.6993 4.1460 ( 2 60 91) 0 0.9958 0.6993 14 20 ( 3143 1k2p_A) ( 5510 1r0p_A) 0.9997 0.8234 2.5370 ( 1 63 91) 0 0.9997 0.8234 14 17 ( 3143 1k2p_A) ( 5539 1r3c_A) 0.9400 0.6292 2.7909 ( 4 55 91) 0 0.9400 0.6292 14 22 ( 3143 1k2p_A) ( 5609 1rdq_E) 0.9973 0.7770 2.6925 ( 2 63 91) 0 0.9973 0.7770 14 18 ( 3143 1k2p_A) ( 5917 1tki_A) 0.9970 0.6995 2.5118 ( 2 61 91) 0 0.9970 0.6995 14 20 ( 3143 1k2p_A) ( 6112 1uu3_A) 0.9970 0.7769 2.6228 ( 2 61 91) 0 0.9970 0.7769 14 18 ( 3143 1k2p_A) ( 6130 1uwh_A) 0.9975 0.8737 2.5843 ( 2 64 91) 0 0.9975 0.8737 14 16 -------------------------------------------------------------------------------------------------------------------------