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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3808 1m2r_A) ( 7 1a06 ) 0.7418 0.7730 3.2750 ( 6 65 105) 0 0.7418 0.7730 19 18
( 3808 1m2r_A) ( 608 1cja_A) 0.5772 0.6088 5.3295 ( 2 36 55) 0 0.6298 0.6643 19 18
( 3808 1m2r_A) ( 675 1csn ) 0.7732 0.9009 3.8089 ( 5 73 105) 0 0.7732 0.9009 19 16
( 3808 1m2r_A) ( 1070 1e7u_A) 0.2631 0.2381 7.3239 ( 0 6 10) 0 0.4900 0.4529 19 21
( 3808 1m2r_A) ( 1385 1f3m_C) 0.6706 0.7046 3.6100 ( 4 51 78) 0 0.6706 0.7046 19 18
( 3808 1m2r_A) ( 1498 1fgk_A) 0.7592 0.9136 3.8948 ( 6 74 105) 0 0.7592 0.9136 19 15
( 3808 1m2r_A) ( 1563 1fmk ) 0.7876 0.9331 3.1342 ( 3 77 105) 0 0.7876 0.9331 19 16
( 3808 1m2r_A) ( 2018 1gz8_A) 0.8266 0.8688 2.3353 ( 5 80 120) 0 0.8266 0.8688 19 18
( 3808 1m2r_A) ( 2439 1ia9_A) 0.2797 0.2813 7.3950 ( 9 26 36) 0 0.3860 0.4005 19 18
( 3808 1m2r_A) ( 2446 1ias_A) 0.7377 0.7087 3.5445 ( 7 74 105) 0 0.7377 0.7087 19 20
( 3808 1m2r_A) ( 2756 1j7l_A) 0.5169 0.5169 4.1852 ( 8 48 66) 0 0.5346 0.5346 19 19
( 3808 1m2r_A) ( 2947 1jks_A) 0.7726 0.8995 2.1286 ( 5 72 105) 0 0.7726 0.8995 19 16
( 3808 1m2r_A) ( 3143 1k2p_A) 0.6851 0.8262 2.5623 ( 6 58 91) 0 0.6851 0.8262 19 14
( 3808 1m2r_A) ( 3379 1kob_A) 0.7696 0.7020 2.5515 ( 5 69 105) 0 0.7696 0.7020 19 21
( 3808 1m2r_A) ( 3778 1m14_A) 0.7578 0.9101 3.0006 ( 6 73 105) 0 0.7578 0.9101 19 15
( 3808 1m2r_A) ( 3808 1m2r_A) 1.0000 1.0000 0.0000 ( 0 137 171) 0 1.0000 1.0000 19 19
( 3808 1m2r_A) ( 4001 1mp8_A) 0.7748 0.9554 3.7191 ( 5 75 105) 0 0.7748 0.9554 19 15
( 3808 1m2r_A) ( 4008 1mq4_A) 0.7621 0.8368 3.0527 ( 6 76 105) 0 0.7621 0.8368 19 17
( 3808 1m2r_A) ( 4200 1nd4_A) 0.5776 0.6448 4.0657 ( 2 38 55) 0 0.6066 0.6645 19 17
( 3808 1m2r_A) ( 4408 1nvr_A) 0.7367 0.8746 3.6243 ( 1 65 91) 0 0.7859 0.9291 19 16
( 3808 1m2r_A) ( 4411 1nw1_A) 0.2105 0.1818 7.6883 ( 0 4 6) 0 0.5878 0.5481 19 22
( 3808 1m2r_A) ( 4428 1nxk_A) 0.7544 0.7886 3.5970 ( 6 71 105) 0 0.7544 0.7886 19 18
( 3808 1m2r_A) ( 4511 1o6l_A) 0.6979 0.7600 2.3785 ( 6 63 91) 0 0.6979 0.7646 19 17
( 3808 1m2r_A) ( 4519 1o6y_A) 0.7422 0.8393 3.1284 ( 7 76 105) 0 0.7422 0.8738 19 16
( 3808 1m2r_A) ( 4717 1omw_A) 0.7189 0.7189 2.9565 ( 5 65 91) 0 0.7189 0.7189 19 19
( 3808 1m2r_A) ( 4889 1p4o_A) 0.7820 0.8695 4.0827 ( 4 72 105) 0 0.7820 0.8695 19 17
( 3808 1m2r_A) ( 5013 1phk ) 0.7734 0.9013 2.3715 ( 5 73 105) 0 0.7734 0.9013 19 16
( 3808 1m2r_A) ( 5201 1q41_A) 0.8187 0.7474 2.7672 ( 6 86 120) 0 0.8187 0.7474 19 21
( 3808 1m2r_A) ( 5248 1q8y_A) 0.8185 0.7815 3.7153 ( 6 86 120) 0 0.8185 0.7815 19 20
( 3808 1m2r_A) ( 5510 1r0p_A) 0.7577 0.8298 3.7507 ( 6 73 105) 0 0.7577 0.8298 19 17
( 3808 1m2r_A) ( 5539 1r3c_A) 0.7664 0.7009 3.0261 ( 10 93 136) 0 0.7664 0.7098 19 22
( 3808 1m2r_A) ( 5609 1rdq_E) 0.7378 0.7680 2.4956 ( 7 74 105) 0 0.7378 0.7771 19 18
( 3808 1m2r_A) ( 5917 1tki_A) 0.7368 0.6999 2.6578 ( 1 62 91) 0 0.7705 0.7352 19 20
( 3808 1m2r_A) ( 6112 1uu3_A) 0.7749 0.8145 2.9226 ( 5 75 105) 0 0.7749 0.8145 19 18
( 3808 1m2r_A) ( 6130 1uwh_A) 0.7331 0.8662 3.9157 ( 3 59 91) 0 0.7331 0.8662 19 16
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