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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 4411 1nw1_A) ( 7 1a06 ) 0.2273 0.2778 7.6322 ( 0 7 10) 0 0.3520 0.3651 22 18
( 4411 1nw1_A) ( 608 1cja_A) 0.2925 0.3314 8.3085 ( 3 12 21) 0 0.4410 0.4881 22 18
( 4411 1nw1_A) ( 675 1csn ) 0.1818 0.2500 6.0105 ( 0 0 6) 0 0.4092 0.4511 22 16
( 4411 1nw1_A) ( 1070 1e7u_A) 0.3817 0.3857 8.7948 ( 11 45 66) 0 0.3817 0.3857 22 21
( 4411 1nw1_A) ( 1385 1f3m_C) 0.2266 0.2760 9.4131 ( 1 7 10) 0 0.3192 0.3526 22 18
( 4411 1nw1_A) ( 1498 1fgk_A) 0.1818 0.2667 4.0524 ( 0 3 6) 0 0.2727 0.3998 22 15
( 4411 1nw1_A) ( 1563 1fmk ) 0.2727 0.3750 5.6164 ( 0 7 15) 0 0.5534 0.6772 22 16
( 4411 1nw1_A) ( 2018 1gz8_A) 0.2687 0.3229 6.3039 ( 2 11 15) 0 0.4655 0.5076 22 18
( 4411 1nw1_A) ( 2439 1ia9_A) 0.1818 0.2222 5.6450 ( 0 3 6) 0 0.4605 0.5225 22 18
( 4411 1nw1_A) ( 2446 1ias_A) 0.2272 0.2500 10.0728 ( 0 8 10) 0 0.4320 0.4655 22 20
( 4411 1nw1_A) ( 2756 1j7l_A) 0.6739 0.7733 4.5351 ( 6 88 105) 0 0.6798 0.7852 22 19
( 4411 1nw1_A) ( 2947 1jks_A) 0.2687 0.3569 9.3905 ( 2 11 15) 0 0.4746 0.5423 22 16
( 4411 1nw1_A) ( 3143 1k2p_A) 0.2181 0.2972 9.4875 ( 2 7 10) 0 0.2872 0.3569 22 14
( 4411 1nw1_A) ( 3379 1kob_A) 0.2727 0.2857 5.7708 ( 0 7 15) 0 0.4152 0.4213 22 21
( 4411 1nw1_A) ( 3778 1m14_A) 0.1818 0.2667 6.2516 ( 0 2 6) 0 0.3813 0.3961 22 15
( 4411 1nw1_A) ( 3808 1m2r_A) 0.2116 0.2342 10.1282 ( 2 6 10) 0 0.5481 0.5878 22 19
( 4411 1nw1_A) ( 4001 1mp8_A) 0.1818 0.2667 6.4918 ( 0 4 6) 0 0.3239 0.3382 22 15
( 4411 1nw1_A) ( 4008 1mq4_A) 0.1818 0.2353 6.1490 ( 0 5 6) 0 0.5211 0.6313 22 17
( 4411 1nw1_A) ( 4200 1nd4_A) 0.6801 0.8762 4.3886 ( 4 89 105) 0 0.6801 0.8762 22 17
( 4411 1nw1_A) ( 4408 1nvr_A) 0.1818 0.2500 5.6786 ( 0 4 6) 0 0.3520 0.3747 22 16
( 4411 1nw1_A) ( 4411 1nw1_A) 1.0000 1.0000 0.0000 ( 0 201 231) 0 1.0000 1.0000 22 22
( 4411 1nw1_A) ( 4428 1nxk_A) 0.2273 0.2778 7.1432 ( 0 6 10) 0 0.4606 0.5227 22 18
( 4411 1nw1_A) ( 4511 1o6l_A) 0.2724 0.3519 8.5226 ( 1 11 15) 0 0.4977 0.6389 22 17
( 4411 1nw1_A) ( 4519 1o6y_A) 0.2272 0.3123 11.0058 ( 0 7 10) 0 0.5860 0.7894 22 16
( 4411 1nw1_A) ( 4717 1omw_A) 0.2272 0.2631 11.1155 ( 0 6 10) 0 0.3626 0.4190 22 19
( 4411 1nw1_A) ( 4889 1p4o_A) 0.1818 0.2353 3.9284 ( 0 3 6) 0 0.4963 0.5466 22 17
( 4411 1nw1_A) ( 5013 1phk ) 0.1818 0.2500 8.2606 ( 0 4 6) 0 0.4825 0.6163 22 16
( 4411 1nw1_A) ( 5201 1q41_A) 0.2272 0.2380 12.4631 ( 0 8 10) 0 0.3316 0.3344 22 21
( 4411 1nw1_A) ( 5248 1q8y_A) 0.1818 0.2000 6.5994 ( 0 4 6) 0 0.5281 0.5730 22 20
( 4411 1nw1_A) ( 5510 1r0p_A) 0.1818 0.2353 8.2312 ( 0 1 6) 0 0.3520 0.4117 22 17
( 4411 1nw1_A) ( 5539 1r3c_A) 0.2727 0.2727 4.7835 ( 0 5 15) 0 0.4185 0.4185 22 22
( 4411 1nw1_A) ( 5609 1rdq_E) 0.2687 0.3229 9.2420 ( 2 11 15) 0 0.4808 0.5641 22 18
( 4411 1nw1_A) ( 5917 1tki_A) 0.2727 0.3000 4.7218 ( 0 9 15) 0 0.3750 0.3851 22 20
( 4411 1nw1_A) ( 6112 1uu3_A) 0.2269 0.2768 6.7060 ( 1 8 10) 0 0.4446 0.5301 22 18
( 4411 1nw1_A) ( 6130 1uwh_A) 0.2272 0.3123 10.7539 ( 0 8 10) 0 0.4998 0.6863 22 16
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