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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5609 1rdq_E) ( 7 1a06 ) 0.8332 0.8332 3.0479 ( 1 70 105) 0 0.8332 0.8332 18 18
( 5609 1rdq_E) ( 608 1cja_A) 0.2778 0.2778 4.6943 ( 0 4 10) 0 0.4178 0.4178 18 18
( 5609 1rdq_E) ( 675 1csn ) 0.8326 0.9362 3.5780 ( 2 77 105) 0 0.8326 0.9362 18 16
( 5609 1rdq_E) ( 1070 1e7u_A) 0.3333 0.2857 4.5115 ( 0 11 15) 0 0.3333 0.2857 18 21
( 5609 1rdq_E) ( 1385 1f3m_C) 0.7777 0.7777 2.7859 ( 0 63 91) 0 0.7777 0.7777 18 18
( 5609 1rdq_E) ( 1498 1fgk_A) 0.8326 0.9981 3.9135 ( 2 80 105) 0 0.8326 0.9981 18 15
( 5609 1rdq_E) ( 1563 1fmk ) 0.8332 0.9373 2.8987 ( 1 78 105) 0 0.8332 0.9373 18 16
( 5609 1rdq_E) ( 2018 1gz8_A) 0.8328 0.8328 2.1230 ( 2 74 105) 0 0.8328 0.8328 18 18
( 5609 1rdq_E) ( 2439 1ia9_A) 0.3420 0.3420 6.3957 ( 9 32 45) 0 0.3889 0.3889 18 18
( 5609 1rdq_E) ( 2446 1ias_A) 0.8331 0.7498 3.4844 ( 1 77 105) 0 0.8331 0.7498 18 20
( 5609 1rdq_E) ( 2756 1j7l_A) 0.2685 0.2560 8.1179 ( 2 9 10) 0 0.6489 0.6179 18 19
( 5609 1rdq_E) ( 2947 1jks_A) 0.8333 0.9375 1.1708 ( 0 77 105) 0 0.8333 0.9375 18 16
( 5609 1rdq_E) ( 3143 1k2p_A) 0.7770 0.9973 2.6925 ( 2 63 91) 0 0.7770 0.9973 18 14
( 5609 1rdq_E) ( 3379 1kob_A) 0.8328 0.7140 2.1210 ( 2 74 105) 0 0.8821 0.7587 18 21
( 5609 1rdq_E) ( 3778 1m14_A) 0.8308 0.9936 3.1894 ( 3 76 105) 0 0.8308 0.9936 18 15
( 5609 1rdq_E) ( 3808 1m2r_A) 0.7771 0.7363 2.3208 ( 2 64 91) 0 0.7771 0.7378 18 19
( 5609 1rdq_E) ( 4001 1mp8_A) 0.8307 0.9934 3.9445 ( 3 77 105) 0 0.8307 0.9934 18 15
( 5609 1rdq_E) ( 4008 1mq4_A) 0.8886 0.9408 1.4695 ( 2 94 120) 0 0.8886 0.9408 18 17
( 5609 1rdq_E) ( 4200 1nd4_A) 0.5554 0.5880 3.7110 ( 1 30 45) 0 0.6109 0.6468 18 17
( 5609 1rdq_E) ( 4408 1nvr_A) 0.7775 0.8745 3.7795 ( 1 66 91) 0 0.7775 0.8745 18 16
( 5609 1rdq_E) ( 4411 1nw1_A) 0.3229 0.2687 9.2420 ( 2 11 15) 0 0.4213 0.4028 18 22
( 5609 1rdq_E) ( 4428 1nxk_A) 0.7776 0.7776 3.3835 ( 1 64 91) 0 0.7776 0.7776 18 18
( 5609 1rdq_E) ( 4511 1o6l_A) 0.8886 0.9408 1.0000 ( 2 95 120) 0 0.8886 0.9408 18 17
( 5609 1rdq_E) ( 4519 1o6y_A) 0.8328 0.9365 2.7239 ( 2 77 105) 0 0.8328 0.9365 18 16
( 5609 1rdq_E) ( 4717 1omw_A) 0.8886 0.8419 1.9527 ( 2 98 120) 0 0.8886 0.8419 18 19
( 5609 1rdq_E) ( 4889 1p4o_A) 0.8382 0.8760 4.2264 ( 7 87 120) 0 0.8382 0.8811 18 17
( 5609 1rdq_E) ( 5013 1phk ) 0.8333 0.9374 2.0800 ( 1 77 105) 0 0.8333 0.9374 18 16
( 5609 1rdq_E) ( 5201 1q41_A) 0.8328 0.7140 2.7606 ( 2 78 105) 0 0.8328 0.7140 18 21
( 5609 1rdq_E) ( 5248 1q8y_A) 0.8330 0.7498 3.8856 ( 0 72 105) 0 0.8330 0.7498 18 20
( 5609 1rdq_E) ( 5510 1r0p_A) 0.8321 0.8807 4.6885 ( 2 75 105) 0 0.8321 0.8807 18 17
( 5609 1rdq_E) ( 5539 1r3c_A) 0.8326 0.6816 2.9309 ( 2 72 105) 0 0.8326 0.6816 18 22
( 5609 1rdq_E) ( 5609 1rdq_E) 1.0000 1.0000 0.0000 ( 0 129 153) 0 1.0000 1.0000 18 18
( 5609 1rdq_E) ( 5917 1tki_A) 0.8306 0.7484 2.5187 ( 3 74 105) 0 0.8306 0.7484 18 20
( 5609 1rdq_E) ( 6112 1uu3_A) 0.9432 0.9432 1.5542 ( 3 106 136) 0 0.9432 0.9432 18 18
( 5609 1rdq_E) ( 6130 1uwh_A) 0.8330 0.9370 3.5968 ( 1 75 105) 0 0.8330 0.9370 18 16
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