------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1257 1et9_A) ( 162 1an8 ) 0.8888 0.9998 2.5743 ( 0 17 28) 0 0.8888 0.9998 9 8 ( 1257 1et9_A) ( 239 1ayf_A) 0.6665 0.6665 4.3498 ( 0 11 15) 0 0.6665 0.6665 9 9 ( 1257 1et9_A) ( 330 1b9r_A) 0.4444 0.6665 4.3244 ( 0 4 6) 0 0.4444 0.6665 9 6 ( 1257 1et9_A) ( 508 1c1y_B) 0.7631 0.9521 5.9608 ( 1 15 21) 0 0.7631 0.9521 9 7 ( 1257 1et9_A) ( 715 1czp_A) 0.6665 0.8566 4.2442 ( 0 11 15) 0 0.6665 0.8566 9 7 ( 1257 1et9_A) ( 746 1d4b_A) 0.4444 0.6665 4.4863 ( 0 5 6) 0 0.6658 0.9935 9 6 ( 1257 1et9_A) ( 896 1doi ) 0.6665 0.5000 4.1055 ( 0 11 15) 0 0.6665 0.5000 9 12 ( 1257 1et9_A) ( 1067 1e7u_A) 0.4444 0.4000 4.5266 ( 0 5 6) 0 0.4444 0.4000 9 10 ( 1257 1et9_A) ( 1218 1enf_A) 0.9999 0.9000 1.7596 ( 0 24 36) 0 0.9999 0.9000 9 10 ( 1257 1et9_A) ( 1257 1et9_A) 1.0000 1.0000 0.0000 ( 0 29 36) 0 1.0000 1.0000 9 9 ( 1257 1et9_A) ( 1263 1eu3_A) 0.8560 0.8560 2.6485 ( 1 14 28) 0 0.8560 0.8560 9 9 ( 1257 1et9_A) ( 1354 1f0z_A) 0.4442 0.5707 7.5132 ( 0 5 6) 0 0.4442 0.5707 9 7 ( 1257 1et9_A) ( 1481 1feh_A) 0.6665 0.7497 4.2543 ( 0 11 15) 0 0.6665 0.7497 9 8 ( 1257 1et9_A) ( 1556 1fm0_D) 0.5554 0.7139 4.9355 ( 0 7 10) 0 0.5554 0.7139 9 7 ( 1257 1et9_A) ( 1582 1fo4_A) 0.6665 0.9986 4.3619 ( 0 11 15) 0 0.6665 0.9986 9 6 ( 1257 1et9_A) ( 1815 1gg3_A) 0.5554 0.8324 4.9442 ( 0 8 10) 0 0.5554 0.8324 9 6 ( 1257 1et9_A) ( 1881 1gnu_A) 0.5555 0.6250 2.8358 ( 0 8 10) 0 0.5555 0.6250 9 8 ( 1257 1et9_A) ( 2078 1h4r_A) 0.6666 0.9994 3.6028 ( 0 12 15) 0 0.6666 0.9994 9 6 ( 1257 1et9_A) ( 2385 1i4g_A) 0.7302 0.6533 2.5772 ( 2 17 28) 0 0.7302 0.6533 9 11 ( 1257 1et9_A) ( 2421 1i7h_A) 0.6665 0.8567 4.0710 ( 0 11 15) 0 0.6665 0.8567 9 7 ( 1257 1et9_A) ( 2554 1ip9_A) 0.5555 0.8326 4.7411 ( 0 7 10) 0 0.5555 0.8326 9 6 ( 1257 1et9_A) ( 2764 1j8c_A) 0.6516 0.9059 3.5094 ( 1 12 15) 0 0.6516 0.9059 9 6 ( 1257 1et9_A) ( 2786 1jal_A) 0.6665 0.6665 4.2129 ( 0 11 15) 0 0.6665 0.6665 9 9 ( 1257 1et9_A) ( 3015 1jq4_A) 0.5554 0.8322 5.2388 ( 0 7 10) 0 0.5554 0.8322 9 6 ( 1257 1et9_A) ( 3219 1k8r_B) 0.6665 0.8565 4.4476 ( 0 10 15) 0 0.6665 0.8565 9 7 ( 1257 1et9_A) ( 3282 1kf6_B) 0.6665 0.8565 4.3757 ( 0 11 15) 0 0.6665 0.8565 9 7 ( 1257 1et9_A) ( 3408 1krh_A) 0.6666 0.7498 3.7801 ( 0 12 15) 0 0.6666 0.7498 9 8 ( 1257 1et9_A) ( 3533 1l4d_B) 0.5171 0.5228 6.5731 ( 3 16 28) 0 0.5171 0.5228 9 8 ( 1257 1et9_A) ( 3544 1l5p_A) 0.6665 0.7497 4.1611 ( 0 12 15) 0 0.6665 0.7497 9 8 ( 1257 1et9_A) ( 3565 1l7y_A) 0.5555 0.8327 4.5763 ( 0 7 10) 0 0.5555 0.8327 9 6 ( 1257 1et9_A) ( 3616 1lfd_A) 0.6665 0.9985 4.4348 ( 0 11 15) 0 0.6665 0.9985 9 6 ( 1257 1et9_A) ( 3626 1lgr ) 0.5106 0.5936 7.3715 ( 1 7 10) 0 0.5106 0.5936 9 7 ( 1257 1et9_A) ( 3837 1m4v_A) 0.9160 0.9160 5.1959 ( 2 25 36) 0 0.9160 0.9160 9 9 ( 1257 1et9_A) ( 3886 1m94_A) 0.5555 0.8332 3.2826 ( 0 7 10) 0 0.5555 0.8332 9 6 ( 1257 1et9_A) ( 3919 1mg4_A) 0.4444 0.6665 4.3214 ( 0 5 6) 0 0.4444 0.6665 9 6 ( 1257 1et9_A) ( 4135 1n62_A) 0.4444 0.5712 5.3738 ( 0 5 6) 0 0.4444 0.5712 9 7 ( 1257 1et9_A) ( 4215 1nek_B) 0.6665 0.8565 4.3999 ( 0 12 15) 0 0.6665 0.8565 9 7 ( 1257 1et9_A) ( 4619 1oey_A) 0.6662 0.9967 5.4351 ( 0 11 15) 0 0.6662 0.9967 9 6 ( 1257 1et9_A) ( 4620 1oey_J) 0.7770 0.9971 5.2515 ( 0 15 21) 0 0.7770 0.9971 9 7 ( 1257 1et9_A) ( 4648 1ogw_A) 0.6513 0.9044 5.3215 ( 1 12 15) 0 0.6513 0.9044 9 6 ( 1257 1et9_A) ( 4754 1oqq_A) 0.6665 0.7497 4.1878 ( 0 11 15) 0 0.6665 0.7497 9 8 ( 1257 1et9_A) ( 5081 1pqs_A) 0.5555 0.8326 4.7059 ( 0 6 10) 0 0.5555 0.8326 9 6 ( 1257 1et9_A) ( 5304 1qf6_A) 0.4444 0.6661 5.8836 ( 0 3 6) 0 0.5366 0.7242 9 6 ( 1257 1et9_A) ( 5373 1qla_B) 0.6665 0.7497 4.1202 ( 0 11 15) 0 0.6665 0.7497 9 8 ( 1257 1et9_A) ( 5427 1qqr_A) 0.6240 0.5734 5.0371 ( 1 9 15) 0 0.6240 0.5734 9 10 ( 1257 1et9_A) ( 5872 1t0y_A) 0.6666 0.9997 3.0769 ( 0 12 15) 0 0.6666 0.9997 9 6 ( 1257 1et9_A) ( 5914 1tif ) 0.4441 0.6641 8.4357 ( 0 2 6) 0 0.4441 0.6641 9 6 ( 1257 1et9_A) ( 5987 1uel_A) 0.5555 0.7139 4.7014 ( 0 9 10) 0 0.5555 0.7139 9 7 ( 1257 1et9_A) ( 6159 1v2y_A) 0.5555 0.7140 4.3472 ( 0 8 10) 0 0.5555 0.7140 9 7 ( 1257 1et9_A) ( 6195 1v8c_A) 0.5554 0.6247 5.2335 ( 0 7 10) 0 0.5554 0.6247 9 8 ( 1257 1et9_A) ( 6509 2pia ) 0.6665 0.9987 4.3073 ( 0 11 15) 0 0.6665 0.9987 9 6 ( 1257 1et9_A) ( 6526 2sak ) 0.6649 0.8511 7.6987 ( 0 11 15) 0 0.6649 0.8511 9 7 ( 1257 1et9_A) ( 6597 3seb ) 0.9998 0.8999 2.5259 ( 0 25 36) 0 0.9998 0.8999 9 10 ( 1257 1et9_A) ( 6602 3tss ) 0.6664 0.7495 4.8218 ( 0 9 15) 0 0.6664 0.7495 9 8 -------------------------------------------------------------------------------------------------------------------------