------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1815 1gg3_A) ( 162 1an8 ) 0.6662 0.4999 5.4579 ( 0 4 6) 0 0.6662 0.4999 6 8 ( 1815 1gg3_A) ( 239 1ayf_A) 0.8324 0.5554 5.0244 ( 0 9 10) 0 0.8324 0.5554 6 9 ( 1815 1gg3_A) ( 330 1b9r_A) 0.6666 0.6666 2.5923 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 1815 1gg3_A) ( 508 1c1y_B) 0.4613 0.4569 3.1949 ( 3 14 15) 0 0.4613 0.4569 6 7 ( 1815 1gg3_A) ( 715 1czp_A) 0.8330 0.7141 3.9126 ( 0 8 10) 0 0.8330 0.7141 6 7 ( 1815 1gg3_A) ( 746 1d4b_A) 0.6860 0.6860 3.1462 ( 1 8 10) 0 0.6860 0.6860 6 6 ( 1815 1gg3_A) ( 896 1doi ) 0.8330 0.4167 3.9663 ( 0 8 10) 0 0.8330 0.4167 6 12 ( 1815 1gg3_A) ( 1067 1e7u_A) 0.8333 0.5000 2.0656 ( 0 9 10) 0 0.8333 0.5386 6 10 ( 1815 1gg3_A) ( 1218 1enf_A) 0.6664 0.4000 4.8121 ( 0 5 6) 0 0.6664 0.4000 6 10 ( 1815 1gg3_A) ( 1257 1et9_A) 0.8324 0.5554 4.9442 ( 0 8 10) 0 0.8324 0.5554 6 9 ( 1815 1gg3_A) ( 1263 1eu3_A) 0.8317 0.5553 5.7354 ( 0 7 10) 0 0.8317 0.5553 6 9 ( 1815 1gg3_A) ( 1354 1f0z_A) 0.6666 0.5714 3.7249 ( 0 5 6) 0 0.6666 0.5714 6 7 ( 1815 1gg3_A) ( 1481 1feh_A) 0.8333 0.6250 2.1759 ( 0 8 10) 0 0.8333 0.6250 6 8 ( 1815 1gg3_A) ( 1556 1fm0_D) 0.8333 0.7143 2.2416 ( 0 7 10) 0 0.8333 0.7143 6 7 ( 1815 1gg3_A) ( 1582 1fo4_A) 0.8331 0.8331 3.5950 ( 0 8 10) 0 0.8331 0.8331 6 6 ( 1815 1gg3_A) ( 1815 1gg3_A) 1.0000 1.0000 0.0000 ( 0 14 15) 0 1.0000 1.0000 6 6 ( 1815 1gg3_A) ( 1881 1gnu_A) 0.9998 0.7499 2.7270 ( 0 14 15) 0 0.9998 0.7499 6 8 ( 1815 1gg3_A) ( 2078 1h4r_A) 0.8332 0.8332 2.8696 ( 0 9 10) 0 0.8332 0.8332 6 6 ( 1815 1gg3_A) ( 2385 1i4g_A) 0.8321 0.4545 5.2975 ( 0 7 10) 0 0.8321 0.4545 6 11 ( 1815 1gg3_A) ( 2421 1i7h_A) 0.8332 0.7142 2.7910 ( 0 8 10) 0 0.8332 0.7142 6 7 ( 1815 1gg3_A) ( 2554 1ip9_A) 0.8333 0.8333 2.6916 ( 0 7 10) 0 0.8333 0.8333 6 6 ( 1815 1gg3_A) ( 2764 1j8c_A) 0.8333 0.8333 1.8487 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 1815 1gg3_A) ( 2786 1jal_A) 0.8332 0.5555 2.9503 ( 0 8 10) 0 0.8332 0.5555 6 9 ( 1815 1gg3_A) ( 3015 1jq4_A) 0.8293 0.8293 7.1979 ( 0 7 10) 0 0.8293 0.8293 6 6 ( 1815 1gg3_A) ( 3219 1k8r_B) 0.8333 0.7143 2.6552 ( 0 9 10) 0 0.8333 0.7143 6 7 ( 1815 1gg3_A) ( 3282 1kf6_B) 0.8331 0.7142 3.3757 ( 0 9 10) 0 0.8331 0.7142 6 7 ( 1815 1gg3_A) ( 3408 1krh_A) 0.8332 0.6250 2.9980 ( 0 8 10) 0 0.8332 0.6250 6 8 ( 1815 1gg3_A) ( 3533 1l4d_B) 0.8317 0.6246 5.7395 ( 0 7 10) 0 0.8317 0.6246 6 8 ( 1815 1gg3_A) ( 3544 1l5p_A) 0.8332 0.6250 3.0162 ( 0 8 10) 0 0.8332 0.6250 6 8 ( 1815 1gg3_A) ( 3565 1l7y_A) 0.9997 0.9997 3.0471 ( 0 12 15) 0 0.9997 0.9997 6 6 ( 1815 1gg3_A) ( 3616 1lfd_A) 0.8332 0.8332 3.2384 ( 0 8 10) 0 0.8332 0.8332 6 6 ( 1815 1gg3_A) ( 3626 1lgr ) 0.3473 0.3451 5.8307 ( 2 7 10) 0 0.5283 0.4914 6 7 ( 1815 1gg3_A) ( 3837 1m4v_A) 0.6663 0.4444 5.1144 ( 0 5 6) 0 0.6663 0.4444 6 9 ( 1815 1gg3_A) ( 3886 1m94_A) 0.9999 0.9999 1.9503 ( 0 14 15) 0 0.9999 0.9999 6 6 ( 1815 1gg3_A) ( 3919 1mg4_A) 0.8333 0.8333 2.3102 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 1815 1gg3_A) ( 4135 1n62_A) 0.8333 0.7143 2.6233 ( 0 9 10) 0 0.8333 0.7143 6 7 ( 1815 1gg3_A) ( 4215 1nek_B) 0.8331 0.7142 3.3586 ( 0 8 10) 0 0.8331 0.7142 6 7 ( 1815 1gg3_A) ( 4619 1oey_A) 0.6238 0.6238 2.8924 ( 2 13 15) 0 0.6238 0.6238 6 6 ( 1815 1gg3_A) ( 4620 1oey_J) 0.6632 0.6384 3.8998 ( 2 14 15) 0 0.6632 0.6384 6 7 ( 1815 1gg3_A) ( 4648 1ogw_A) 0.9999 0.9999 1.7553 ( 0 14 15) 0 0.9999 0.9999 6 6 ( 1815 1gg3_A) ( 4754 1oqq_A) 0.8333 0.6250 2.4583 ( 0 8 10) 0 0.8333 0.6250 6 8 ( 1815 1gg3_A) ( 5081 1pqs_A) 0.6665 0.6665 4.1703 ( 0 5 6) 0 0.6665 0.6665 6 6 ( 1815 1gg3_A) ( 5304 1qf6_A) 0.6667 0.6667 2.3818 ( 0 5 6) 0 0.6667 0.6667 6 6 ( 1815 1gg3_A) ( 5373 1qla_B) 0.8332 0.6250 3.2917 ( 0 8 10) 0 0.8332 0.6250 6 8 ( 1815 1gg3_A) ( 5427 1qqr_A) 0.8308 0.4998 6.3833 ( 0 7 10) 0 0.8308 0.4998 6 10 ( 1815 1gg3_A) ( 5872 1t0y_A) 0.8333 0.8333 2.5887 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 1815 1gg3_A) ( 5914 1tif ) 0.6860 0.6860 3.2608 ( 1 8 10) 0 0.6860 0.6860 6 6 ( 1815 1gg3_A) ( 5987 1uel_A) 0.9999 0.8571 1.8172 ( 0 13 15) 0 0.9999 0.8571 6 7 ( 1815 1gg3_A) ( 6159 1v2y_A) 0.9995 0.8569 3.4015 ( 0 13 15) 0 0.9995 0.8569 6 7 ( 1815 1gg3_A) ( 6195 1v8c_A) 0.8332 0.6250 2.7503 ( 0 7 10) 0 0.8332 0.6250 6 8 ( 1815 1gg3_A) ( 6509 2pia ) 0.8331 0.8331 3.3263 ( 0 8 10) 0 0.8331 0.8331 6 6 ( 1815 1gg3_A) ( 6526 2sak ) 0.8328 0.7140 4.3054 ( 0 8 10) 0 0.8328 0.7140 6 7 ( 1815 1gg3_A) ( 6597 3seb ) 0.8318 0.4999 5.6620 ( 0 8 10) 0 0.8318 0.4999 6 10 ( 1815 1gg3_A) ( 6602 3tss ) 0.8317 0.6246 5.6872 ( 0 7 10) 0 0.8317 0.6246 6 8 -------------------------------------------------------------------------------------------------------------------------