------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3015 1jq4_A) ( 162 1an8 ) 0.6657 0.4998 6.5940 ( 0 3 6) 0 0.6657 0.4998 6 8 ( 3015 1jq4_A) ( 239 1ayf_A) 0.8773 0.6458 4.2744 ( 1 11 15) 0 0.8773 0.6458 6 9 ( 3015 1jq4_A) ( 330 1b9r_A) 0.6666 0.6666 3.1333 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 3015 1jq4_A) ( 508 1c1y_B) 0.8330 0.7141 3.8866 ( 0 7 10) 0 0.8330 0.7141 6 7 ( 3015 1jq4_A) ( 715 1czp_A) 0.9997 0.8570 2.8931 ( 0 12 15) 0 0.9997 0.8570 6 7 ( 3015 1jq4_A) ( 746 1d4b_A) nil ( 3015 1jq4_A) ( 896 1doi ) 0.9059 0.4963 3.5304 ( 1 12 15) 0 0.9059 0.4963 6 12 ( 3015 1jq4_A) ( 1067 1e7u_A) 0.6666 0.4000 2.8561 ( 0 4 6) 0 0.8331 0.5000 6 10 ( 3015 1jq4_A) ( 1218 1enf_A) 0.6662 0.4000 5.4379 ( 0 3 6) 0 0.6662 0.4000 6 10 ( 3015 1jq4_A) ( 1257 1et9_A) 0.8322 0.5554 5.2388 ( 0 7 10) 0 0.8322 0.5554 6 9 ( 3015 1jq4_A) ( 1263 1eu3_A) 0.8301 0.5551 6.8135 ( 0 6 10) 0 0.8301 0.5551 6 9 ( 3015 1jq4_A) ( 1354 1f0z_A) 0.1996 0.1993 5.8883 ( 2 4 6) 0 0.2987 0.2977 6 7 ( 3015 1jq4_A) ( 1481 1feh_A) 0.8328 0.6249 4.3866 ( 0 7 10) 0 0.8328 0.6249 6 8 ( 3015 1jq4_A) ( 1556 1fm0_D) 0.8328 0.7141 4.2317 ( 0 7 10) 0 0.8328 0.7141 6 7 ( 3015 1jq4_A) ( 1582 1fo4_A) 0.8329 0.8329 4.1100 ( 0 7 10) 0 0.8329 0.8329 6 6 ( 3015 1jq4_A) ( 1815 1gg3_A) 0.8293 0.8293 7.1979 ( 0 7 10) 0 0.8293 0.8293 6 6 ( 3015 1jq4_A) ( 1881 1gnu_A) 0.8319 0.6247 5.5696 ( 0 7 10) 0 0.8319 0.6247 6 8 ( 3015 1jq4_A) ( 2078 1h4r_A) 0.8325 0.8325 4.8062 ( 0 7 10) 0 0.8325 0.8325 6 6 ( 3015 1jq4_A) ( 2385 1i4g_A) 0.6656 0.3636 6.7691 ( 0 4 6) 0 0.6656 0.3636 6 11 ( 3015 1jq4_A) ( 2421 1i7h_A) 0.9988 0.8566 4.1997 ( 0 10 15) 0 0.9988 0.8566 6 7 ( 3015 1jq4_A) ( 2554 1ip9_A) 0.8319 0.8319 5.5322 ( 0 6 10) 0 0.8319 0.8319 6 6 ( 3015 1jq4_A) ( 2764 1j8c_A) 0.6666 0.6666 3.7853 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 3015 1jq4_A) ( 2786 1jal_A) 0.8328 0.5555 4.3296 ( 0 7 10) 0 0.8328 0.5555 6 9 ( 3015 1jq4_A) ( 3015 1jq4_A) 1.0000 1.0000 0.0000 ( 0 12 15) 0 1.0000 1.0000 6 6 ( 3015 1jq4_A) ( 3219 1k8r_B) nil ( 3015 1jq4_A) ( 3282 1kf6_B) 0.8331 0.7142 3.5682 ( 0 7 10) 0 0.8331 0.7142 6 7 ( 3015 1jq4_A) ( 3408 1krh_A) 0.9996 0.7499 3.2617 ( 0 12 15) 0 0.9996 0.7499 6 8 ( 3015 1jq4_A) ( 3533 1l4d_B) 0.8281 0.6237 7.6667 ( 0 7 10) 0 0.8281 0.6237 6 8 ( 3015 1jq4_A) ( 3544 1l5p_A) 0.9992 0.7498 3.8566 ( 0 10 15) 0 0.9992 0.7498 6 8 ( 3015 1jq4_A) ( 3565 1l7y_A) 0.8232 0.8232 9.0826 ( 0 7 10) 0 0.8232 0.8232 6 6 ( 3015 1jq4_A) ( 3616 1lfd_A) 0.8326 0.8326 4.6160 ( 0 7 10) 0 0.8326 0.8326 6 6 ( 3015 1jq4_A) ( 3626 1lgr ) 0.3878 0.3789 8.9188 ( 1 4 6) 1 0.3878 0.3789 6 7 ( 3015 1jq4_A) ( 3837 1m4v_A) 0.8313 0.5553 6.0691 ( 0 7 10) 0 0.8313 0.5553 6 9 ( 3015 1jq4_A) ( 3886 1m94_A) 0.6650 0.6650 7.6224 ( 0 5 6) 0 0.6650 0.6650 6 6 ( 3015 1jq4_A) ( 3919 1mg4_A) 0.8327 0.8327 4.5801 ( 0 6 10) 0 0.8327 0.8327 6 6 ( 3015 1jq4_A) ( 4135 1n62_A) 0.8325 0.7139 4.8762 ( 0 7 10) 0 0.8325 0.7139 6 7 ( 3015 1jq4_A) ( 4215 1nek_B) 0.8329 0.7141 4.2113 ( 0 7 10) 0 0.8329 0.7141 6 7 ( 3015 1jq4_A) ( 4619 1oey_A) 0.8327 0.8327 4.4490 ( 0 7 10) 0 0.8327 0.8327 6 6 ( 3015 1jq4_A) ( 4620 1oey_J) 0.8328 0.7140 4.4110 ( 0 7 10) 0 0.8328 0.7140 6 7 ( 3015 1jq4_A) ( 4648 1ogw_A) 0.8328 0.8328 4.2884 ( 0 7 10) 0 0.8328 0.8328 6 6 ( 3015 1jq4_A) ( 4754 1oqq_A) 0.8329 0.6249 4.1505 ( 0 7 10) 0 0.8329 0.6249 6 8 ( 3015 1jq4_A) ( 5081 1pqs_A) 0.6662 0.6662 5.6641 ( 0 4 6) 0 0.6662 0.6662 6 6 ( 3015 1jq4_A) ( 5304 1qf6_A) 0.1665 0.1665 6.7007 ( 3 5 6) 0 0.1665 0.1665 6 6 ( 3015 1jq4_A) ( 5373 1qla_B) 0.8330 0.6249 3.7903 ( 0 7 10) 0 0.8330 0.6249 6 8 ( 3015 1jq4_A) ( 5427 1qqr_A) 0.8298 0.4997 6.9408 ( 0 6 10) 0 0.8298 0.4997 6 10 ( 3015 1jq4_A) ( 5872 1t0y_A) 0.8322 0.8322 5.2244 ( 0 7 10) 0 0.8322 0.8322 6 6 ( 3015 1jq4_A) ( 5914 1tif ) 0.6666 0.6666 3.0177 ( 0 3 6) 0 0.6666 0.6666 6 6 ( 3015 1jq4_A) ( 5987 1uel_A) 0.8327 0.7140 4.5384 ( 0 7 10) 0 0.8327 0.7140 6 7 ( 3015 1jq4_A) ( 6159 1v2y_A) 0.8999 0.8053 7.2810 ( 1 12 15) 0 0.8999 0.8053 6 7 ( 3015 1jq4_A) ( 6195 1v8c_A) 0.8328 0.6249 4.4071 ( 0 7 10) 0 0.8328 0.6249 6 8 ( 3015 1jq4_A) ( 6509 2pia ) 0.6666 0.6666 3.2140 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 3015 1jq4_A) ( 6526 2sak ) 0.8307 0.7130 6.4747 ( 0 7 10) 0 0.8307 0.7130 6 7 ( 3015 1jq4_A) ( 6597 3seb ) 0.6661 0.4000 5.9097 ( 0 5 6) 0 0.6661 0.4000 6 10 ( 3015 1jq4_A) ( 6602 3tss ) 0.8303 0.6243 6.6919 ( 0 6 10) 0 0.8303 0.6243 6 8 -------------------------------------------------------------------------------------------------------------------------