------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3219 1k8r_B) ( 162 1an8 ) 0.5713 0.4999 4.8516 ( 0 4 6) 0 0.5713 0.4999 7 8 ( 3219 1k8r_B) ( 239 1ayf_A) 0.2477 0.2441 9.2409 ( 2 5 6) 0 0.5710 0.4443 7 9 ( 3219 1k8r_B) ( 330 1b9r_A) 0.2477 0.2487 10.5301 ( 2 5 6) 1 0.2477 0.2487 7 6 ( 3219 1k8r_B) ( 508 1c1y_B) 0.8571 0.8571 1.9960 ( 0 13 15) 0 0.8571 0.8571 7 7 ( 3219 1k8r_B) ( 715 1czp_A) 0.8564 0.8564 4.5331 ( 0 12 15) 0 0.8564 0.8564 7 7 ( 3219 1k8r_B) ( 746 1d4b_A) 0.7143 0.8333 2.6027 ( 0 8 10) 0 0.7143 0.8333 7 6 ( 3219 1k8r_B) ( 896 1doi ) 0.8561 0.4999 4.8887 ( 0 12 15) 0 0.8561 0.4999 7 12 ( 3219 1k8r_B) ( 1067 1e7u_A) 0.7143 0.5000 2.3158 ( 0 9 10) 0 0.7143 0.5000 7 10 ( 3219 1k8r_B) ( 1218 1enf_A) 0.3788 0.3362 9.5433 ( 1 4 6) 0 0.3788 0.3362 7 10 ( 3219 1k8r_B) ( 1257 1et9_A) 0.5713 0.4444 5.0864 ( 0 3 6) 0 0.5713 0.4444 7 9 ( 3219 1k8r_B) ( 1263 1eu3_A) 0.5700 0.4440 8.9439 ( 0 5 6) 0 0.5700 0.4440 7 9 ( 3219 1k8r_B) ( 1354 1f0z_A) 0.7141 0.7141 4.0356 ( 0 8 10) 0 0.7141 0.7141 7 7 ( 3219 1k8r_B) ( 1481 1feh_A) 0.8569 0.7499 3.3250 ( 0 12 15) 0 0.8569 0.7499 7 8 ( 3219 1k8r_B) ( 1556 1fm0_D) 0.7142 0.7142 3.3058 ( 0 7 10) 0 0.7142 0.7142 7 7 ( 3219 1k8r_B) ( 1582 1fo4_A) 0.8569 0.9995 3.4042 ( 0 11 15) 0 0.8569 0.9995 7 6 ( 3219 1k8r_B) ( 1815 1gg3_A) 0.7143 0.8333 2.6552 ( 0 9 10) 0 0.7143 0.8333 7 6 ( 3219 1k8r_B) ( 1881 1gnu_A) 0.7142 0.6249 3.4322 ( 0 9 10) 0 0.8568 0.7498 7 8 ( 3219 1k8r_B) ( 2078 1h4r_A) 0.8571 0.9999 2.2068 ( 0 13 15) 0 0.8571 0.9999 7 6 ( 3219 1k8r_B) ( 2385 1i4g_A) 0.5712 0.3636 5.4741 ( 0 3 6) 0 0.5712 0.3636 7 11 ( 3219 1k8r_B) ( 2421 1i7h_A) 0.7142 0.7142 2.9553 ( 0 8 10) 0 0.7142 0.7142 7 7 ( 3219 1k8r_B) ( 2554 1ip9_A) 0.7143 0.8333 2.0426 ( 0 7 10) 0 0.7143 0.8333 7 6 ( 3219 1k8r_B) ( 2764 1j8c_A) 0.8207 0.9275 2.8640 ( 1 13 15) 0 0.8207 0.9275 7 6 ( 3219 1k8r_B) ( 2786 1jal_A) 0.8571 0.6666 2.6065 ( 0 12 15) 0 0.8571 0.6666 7 9 ( 3219 1k8r_B) ( 3015 1jq4_A) nil ( 3219 1k8r_B) ( 3219 1k8r_B) 1.0000 1.0000 0.0000 ( 0 18 21) 0 1.0000 1.0000 7 7 ( 3219 1k8r_B) ( 3282 1kf6_B) 0.8566 0.8566 4.1291 ( 0 13 15) 0 0.8566 0.8566 7 7 ( 3219 1k8r_B) ( 3408 1krh_A) 0.5705 0.4995 7.8683 ( 0 4 6) 0 0.5705 0.4995 7 8 ( 3219 1k8r_B) ( 3533 1l4d_B) 0.7130 0.6243 6.5194 ( 0 7 10) 0 0.7130 0.6243 7 8 ( 3219 1k8r_B) ( 3544 1l5p_A) 0.8566 0.7497 4.2689 ( 0 12 15) 0 0.8566 0.7497 7 8 ( 3219 1k8r_B) ( 3565 1l7y_A) 0.7142 0.8332 2.9442 ( 0 7 10) 0 0.7897 0.8734 7 6 ( 3219 1k8r_B) ( 3616 1lfd_A) 0.8571 0.9999 2.4999 ( 0 12 15) 0 0.8571 0.9999 7 6 ( 3219 1k8r_B) ( 3626 1lgr ) 0.5713 0.5713 4.6448 ( 0 5 6) 0 0.5713 0.5713 7 7 ( 3219 1k8r_B) ( 3837 1m4v_A) 0.5711 0.4444 6.0648 ( 0 5 6) 0 0.5711 0.4444 7 9 ( 3219 1k8r_B) ( 3886 1m94_A) 0.7142 0.8332 3.2817 ( 0 9 10) 0 0.8160 0.9188 7 6 ( 3219 1k8r_B) ( 3919 1mg4_A) 0.8559 0.9974 5.1416 ( 0 11 15) 0 0.8559 0.9974 7 6 ( 3219 1k8r_B) ( 4135 1n62_A) 0.8568 0.8568 3.6398 ( 0 13 15) 0 0.8568 0.8568 7 7 ( 3219 1k8r_B) ( 4215 1nek_B) 0.8564 0.8564 4.4545 ( 0 12 15) 0 0.8564 0.8564 7 7 ( 3219 1k8r_B) ( 4619 1oey_A) 0.7142 0.8332 3.2217 ( 0 8 10) 0 0.7142 0.8332 7 6 ( 3219 1k8r_B) ( 4620 1oey_J) 0.8569 0.8569 3.3592 ( 0 13 15) 0 0.8569 0.8569 7 7 ( 3219 1k8r_B) ( 4648 1ogw_A) 0.7143 0.8333 2.1978 ( 0 9 10) 0 0.7143 0.8333 7 6 ( 3219 1k8r_B) ( 4754 1oqq_A) 0.7142 0.6249 3.5285 ( 0 8 10) 0 0.7142 0.6249 7 8 ( 3219 1k8r_B) ( 5081 1pqs_A) 0.6293 0.6826 8.8150 ( 1 8 10) 0 0.6293 0.6826 7 6 ( 3219 1k8r_B) ( 5304 1qf6_A) 0.7142 0.8332 3.1853 ( 0 8 10) 0 0.7142 0.8332 7 6 ( 3219 1k8r_B) ( 5373 1qla_B) 0.8566 0.7497 4.1542 ( 0 12 15) 0 0.8566 0.7497 7 8 ( 3219 1k8r_B) ( 5427 1qqr_A) 0.7130 0.4998 6.5762 ( 0 6 10) 0 0.7130 0.4998 7 10 ( 3219 1k8r_B) ( 5872 1t0y_A) 0.8571 0.9998 2.5189 ( 0 11 15) 0 0.8571 0.9998 7 6 ( 3219 1k8r_B) ( 5914 1tif ) 0.6316 0.6860 3.1185 ( 1 8 10) 0 0.6316 0.6860 7 6 ( 3219 1k8r_B) ( 5987 1uel_A) 0.7143 0.7143 2.5333 ( 0 8 10) 0 0.7143 0.7143 7 7 ( 3219 1k8r_B) ( 6159 1v2y_A) nil ( 3219 1k8r_B) ( 6195 1v8c_A) 0.7142 0.6249 3.6635 ( 0 7 10) 0 0.7142 0.6249 7 8 ( 3219 1k8r_B) ( 6509 2pia ) 0.8564 0.9985 4.4806 ( 0 12 15) 0 0.8564 0.9985 7 6 ( 3219 1k8r_B) ( 6526 2sak ) 0.8510 0.8510 7.7166 ( 0 10 15) 0 0.8510 0.8510 7 7 ( 3219 1k8r_B) ( 6597 3seb ) 0.5712 0.4000 5.7983 ( 0 3 6) 0 0.5712 0.4000 7 10 ( 3219 1k8r_B) ( 6602 3tss ) 0.7132 0.6244 6.3043 ( 0 6 10) 0 0.7132 0.6244 7 8 -------------------------------------------------------------------------------------------------------------------------