------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3282 1kf6_B) ( 162 1an8 ) 0.7136 0.6247 5.5194 ( 0 6 10) 0 0.7136 0.6247 7 8 ( 3282 1kf6_B) ( 239 1ayf_A) 0.8571 0.6667 2.0305 ( 0 14 15) 0 0.8571 0.6667 7 9 ( 3282 1kf6_B) ( 330 1b9r_A) 0.5714 0.6666 3.3064 ( 0 4 6) 0 0.5714 0.6666 7 6 ( 3282 1kf6_B) ( 508 1c1y_B) 0.8569 0.8569 3.5678 ( 0 14 15) 0 0.8569 0.8569 7 7 ( 3282 1kf6_B) ( 715 1czp_A) 0.8571 0.8571 2.3909 ( 0 13 15) 0 0.8571 0.8571 7 7 ( 3282 1kf6_B) ( 746 1d4b_A) 0.7142 0.8331 3.3686 ( 0 9 10) 0 0.7142 0.8331 7 6 ( 3282 1kf6_B) ( 896 1doi ) 0.8569 0.5000 3.4424 ( 0 13 15) 0 0.8569 0.5000 7 12 ( 3282 1kf6_B) ( 1067 1e7u_A) 0.7143 0.5000 2.4564 ( 0 9 10) 0 0.7143 0.5000 7 10 ( 3282 1kf6_B) ( 1218 1enf_A) 0.3786 0.3361 11.0120 ( 1 4 6) 0 0.3786 0.3361 7 10 ( 3282 1kf6_B) ( 1257 1et9_A) 0.8565 0.6665 4.3757 ( 0 11 15) 0 0.8565 0.6665 7 9 ( 3282 1kf6_B) ( 1263 1eu3_A) 0.5685 0.4436 10.6418 ( 0 1 6) 0 0.5685 0.4436 7 9 ( 3282 1kf6_B) ( 1354 1f0z_A) 0.7141 0.7141 3.8310 ( 0 9 10) 0 0.7141 0.7141 7 7 ( 3282 1kf6_B) ( 1481 1feh_A) 0.8571 0.7500 2.5567 ( 0 13 15) 0 0.8571 0.7500 7 8 ( 3282 1kf6_B) ( 1556 1fm0_D) 0.7142 0.7142 3.4440 ( 0 7 10) 0 0.7142 0.7142 7 7 ( 3282 1kf6_B) ( 1582 1fo4_A) 0.8567 0.9991 3.9103 ( 0 12 15) 0 0.8567 0.9991 7 6 ( 3282 1kf6_B) ( 1815 1gg3_A) 0.7142 0.8331 3.3757 ( 0 9 10) 0 0.7142 0.8331 7 6 ( 3282 1kf6_B) ( 1881 1gnu_A) 0.7141 0.6249 4.1228 ( 0 9 10) 0 0.7141 0.6249 7 8 ( 3282 1kf6_B) ( 2078 1h4r_A) 0.8569 0.9994 3.4904 ( 0 14 15) 0 0.8569 0.9994 7 6 ( 3282 1kf6_B) ( 2385 1i4g_A) 0.3789 0.3192 8.5782 ( 1 4 6) 0 0.3789 0.3192 7 11 ( 3282 1kf6_B) ( 2421 1i7h_A) 0.8570 0.8570 3.2042 ( 0 13 15) 0 0.8570 0.8570 7 7 ( 3282 1kf6_B) ( 2554 1ip9_A) 0.7139 0.8326 4.7317 ( 0 7 10) 0 0.7139 0.8326 7 6 ( 3282 1kf6_B) ( 2764 1j8c_A) 0.8292 0.9435 3.3192 ( 1 14 15) 0 0.8292 0.9435 7 6 ( 3282 1kf6_B) ( 2786 1jal_A) 0.8570 0.6666 2.9563 ( 0 13 15) 0 0.8570 0.6666 7 9 ( 3282 1kf6_B) ( 3015 1jq4_A) 0.7142 0.8331 3.5682 ( 0 7 10) 0 0.7142 0.8331 7 6 ( 3282 1kf6_B) ( 3219 1k8r_B) 0.8566 0.8566 4.1291 ( 0 13 15) 0 0.8566 0.8566 7 7 ( 3282 1kf6_B) ( 3282 1kf6_B) 1.0000 1.0000 0.0000 ( 0 20 21) 0 1.0000 1.0000 7 7 ( 3282 1kf6_B) ( 3408 1krh_A) 0.8571 0.7500 2.5120 ( 0 13 15) 0 0.8571 0.7500 7 8 ( 3282 1kf6_B) ( 3533 1l4d_B) 0.7115 0.6236 7.9037 ( 0 7 10) 0 0.7115 0.6236 7 8 ( 3282 1kf6_B) ( 3544 1l5p_A) 0.8570 0.7499 2.9658 ( 0 13 15) 0 0.8570 0.7499 7 8 ( 3282 1kf6_B) ( 3565 1l7y_A) 0.7141 0.8328 4.2401 ( 0 7 10) 0 0.7141 0.8328 7 6 ( 3282 1kf6_B) ( 3616 1lfd_A) 0.8568 0.9993 3.6522 ( 0 13 15) 0 0.8568 0.9993 7 6 ( 3282 1kf6_B) ( 3626 1lgr ) 0.5714 0.5714 3.7670 ( 0 5 6) 0 0.5714 0.5714 7 7 ( 3282 1kf6_B) ( 3837 1m4v_A) 0.1249 0.1248 8.4641 ( 4 5 6) 0 0.1249 0.1248 7 9 ( 3282 1kf6_B) ( 3886 1m94_A) 0.7142 0.8332 2.9856 ( 0 9 10) 0 0.7142 0.8332 7 6 ( 3282 1kf6_B) ( 3919 1mg4_A) 0.7141 0.8330 3.8144 ( 0 8 10) 0 0.7141 0.8330 7 6 ( 3282 1kf6_B) ( 4135 1n62_A) 0.8571 0.8571 2.4903 ( 0 14 15) 0 0.8571 0.8571 7 7 ( 3282 1kf6_B) ( 4215 1nek_B) 0.9999 0.9999 2.3348 ( 0 19 21) 0 0.9999 0.9999 7 7 ( 3282 1kf6_B) ( 4619 1oey_A) 0.7142 0.8332 2.8843 ( 0 8 10) 0 0.7142 0.8332 7 6 ( 3282 1kf6_B) ( 4620 1oey_J) 0.8569 0.8569 3.3511 ( 0 14 15) 0 0.8569 0.8569 7 7 ( 3282 1kf6_B) ( 4648 1ogw_A) 0.7142 0.8332 3.2531 ( 0 9 10) 0 0.7142 0.8332 7 6 ( 3282 1kf6_B) ( 4754 1oqq_A) 0.8571 0.7500 2.5364 ( 0 13 15) 0 0.8571 0.7500 7 8 ( 3282 1kf6_B) ( 5081 1pqs_A) 0.5713 0.6665 4.4700 ( 0 6 6) 0 0.5713 0.6665 7 6 ( 3282 1kf6_B) ( 5304 1qf6_A) 0.1664 0.1665 5.8453 ( 3 5 6) 0 0.5700 0.6637 7 6 ( 3282 1kf6_B) ( 5373 1qla_B) 0.9999 0.8750 1.3738 ( 0 19 21) 0 0.9999 0.8750 7 8 ( 3282 1kf6_B) ( 5427 1qqr_A) 0.7118 0.4996 7.7113 ( 0 6 10) 0 0.7118 0.4996 7 10 ( 3282 1kf6_B) ( 5872 1t0y_A) 0.8567 0.9990 4.0138 ( 0 12 15) 0 0.8567 0.9990 7 6 ( 3282 1kf6_B) ( 5914 1tif ) 0.5714 0.6666 3.6236 ( 0 5 6) 0 0.5714 0.6666 7 6 ( 3282 1kf6_B) ( 5987 1uel_A) 0.7142 0.7142 3.3717 ( 0 8 10) 0 0.7142 0.7142 7 7 ( 3282 1kf6_B) ( 6159 1v2y_A) 0.7142 0.7142 3.4966 ( 0 8 10) 0 0.7142 0.7142 7 7 ( 3282 1kf6_B) ( 6195 1v8c_A) 0.7141 0.6249 3.9059 ( 0 7 10) 0 0.7141 0.6249 7 8 ( 3282 1kf6_B) ( 6509 2pia ) 0.8569 0.9995 3.4558 ( 0 13 15) 0 0.8569 0.9995 7 6 ( 3282 1kf6_B) ( 6526 2sak ) 0.7141 0.7141 4.2428 ( 0 8 10) 0 0.7141 0.7141 7 7 ( 3282 1kf6_B) ( 6597 3seb ) 0.8562 0.5998 4.7792 ( 0 11 15) 0 0.8562 0.5998 7 10 ( 3282 1kf6_B) ( 6602 3tss ) 0.8550 0.7489 5.9299 ( 0 9 15) 0 0.8550 0.7489 7 8 -------------------------------------------------------------------------------------------------------------------------