------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [330, 162]: Comparing 1b9r_A and 1an8, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 22 (6 H + 16 S) secondary structure elements in 1an8, of which 8 satisfy the size requirements. NO SIMILARITY! [330, 239]: Comparing 1b9r_A and 1ayf_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1ayf_A, of which 9 satisfy the size requirements. 2.03057 [ 2.14231] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (6 . 6) (8 . 10)) 2.733 {2/10:15} B:0 SIMILARITY (1/min{score1}): 0.4925 [and 1/min{score2}: 0.4668] [330, 330]: Comparing 1b9r_A and 1b9r_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (6 . 6) (8 . 8)) 0.000 {0/10:15} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [330, 508]: Comparing 1b9r_A and 1c1y_B, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 9 (4 H + 5 S) secondary structure elements in 1c1y_B, of which 7 satisfy the size requirements. 2.14430 [ 2.24625] ((1 . 2) (2 . 5) (3 . 3) (5 . 8)) 8.495 {1/5:6} B:1 SIMILARITY (1/min{score1}): 0.4664 [and 1/min{score2}: 0.4452] [330, 715]: Comparing 1b9r_A and 1czp_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1czp_A, of which 7 satisfy the size requirements. 1.50008 [ 1.75005] ((1 . 1) (2 . 2) (3 . 3) (8 . 10)) 2.944 {0/4:6} B:0 2.06211 [ 2.11077] ((1 . 1) (2 . 2) (3 . 3) (6 . 6) (8 . 10)) 4.857 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.5714] [330, 746]: Comparing 1b9r_A and 1d4b_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1d4b_A, of which 6 satisfy the size requirements. 4.01972 [ 4.01972] ((1 . 1) (2 . 2) (3 . 3) (5 . 6)) 6.296 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.2488 [and 1/min{score2}: 0.2488] [330, 896]: Comparing 1b9r_A and 1doi, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 14 (7 H + 7 S) secondary structure elements in 1doi, of which 12 satisfy the size requirements. 1.50006 [ 3.00001] ((1 . 1) (2 . 4) (3 . 5) (8 . 12)) 2.683 {0/4:6} B:0 2.06208 [ 2.64825] ((1 . 1) (2 . 4) (3 . 5) (6 . 8) (8 . 12)) 4.711 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.3776] [330, 1067]: Comparing 1b9r_A and 1e7u_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 61 (37 H + 24 S) secondary structure elements in 1e7u_A, of which 10 satisfy the size requirements. 2.14408 [ 2.72492] ((1 . 6) (2 . 8) (3 . 7) (5 . 10)) 8.248 {1/5:6} B:1 SIMILARITY (1/min{score1}): 0.4664 [and 1/min{score2}: 0.3670] [330, 1218]: Comparing 1b9r_A and 1enf_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 24 (7 H + 17 S) secondary structure elements in 1enf_A, of which 10 satisfy the size requirements. NO SIMILARITY! [330, 1257]: Comparing 1b9r_A and 1et9_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 19 (5 H + 14 S) secondary structure elements in 1et9_A, of which 9 satisfy the size requirements. 1.50040 [ 2.25012] ((1 . 10) (2 . 12) (3 . 14) (8 . 19)) 4.324 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6665 [and 1/min{score2}: 0.4444] [330, 1263]: Comparing 1b9r_A and 1eu3_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 23 (5 H + 18 S) secondary structure elements in 1eu3_A, of which 9 satisfy the size requirements. 1.50113 [ 2.25034] ((1 . 13) (2 . 14) (3 . 17) (8 . 23)) 5.625 {0/4:6} B:0 10.00129 [10.00643] ((1 . 13) (2 . 14) (6 . 20) (8 . 21)) 9.357 {1/1:6} B:0 SIMILARITY (1/min{score1}): 0.6662 [and 1/min{score2}: 0.4444] [330, 1354]: Comparing 1b9r_A and 1f0z_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1f0z_A, of which 7 satisfy the size requirements. NO SIMILARITY! [330, 1481]: Comparing 1b9r_A and 1feh_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 53 (33 H + 20 S) secondary structure elements in 1feh_A, of which 8 satisfy the size requirements. 1.50003 [ 2.00001] ((1 . 1) (2 . 2) (3 . 3) (8 . 7)) 2.247 {0/4:6} B:0 1.50099 [ 2.00042] ((1 . 1) (2 . 2) (3 . 3) (6 . 8)) 5.448 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6667 [and 1/min{score2}: 0.5000] [330, 1556]: Comparing 1b9r_A and 1fm0_D, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1fm0_D, of which 7 satisfy the size requirements. 6.00596 [ 6.01094] ((1 . 1) (2 . 3) (3 . 4) (5 . 5)) 8.960 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.1665 [and 1/min{score2}: 0.1664] [330, 1582]: Comparing 1b9r_A and 1fo4_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 96 (51 H + 45 S) secondary structure elements in 1fo4_A, of which 6 satisfy the size requirements. 1.50006 [ 1.50006] ((1 . 1) (2 . 2) (3 . 3) (8 . 7)) 2.746 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [330, 1815]: Comparing 1b9r_A and 1gg3_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 21 (10 H + 11 S) secondary structure elements in 1gg3_A, of which 6 satisfy the size requirements. 1.50005 [ 1.50005] ((1 . 1) (2 . 2) (3 . 3) (8 . 6)) 2.592 {0/4:6} B:0 1.50189 [ 1.50189] ((1 . 1) (2 . 2) (3 . 3) (6 . 5)) 6.395 {0/3:6} B:0 6.00586 [ 6.00586] ((1 . 1) (2 . 2) (3 . 3) (5 . 5)) 5.322 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [330, 1881]: Comparing 1b9r_A and 1gnu_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (4 H + 4 S) secondary structure elements in 1gnu_A, of which 8 satisfy the size requirements. NO SIMILARITY! [330, 2078]: Comparing 1b9r_A and 1h4r_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 23 (11 H + 12 S) secondary structure elements in 1h4r_A, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 2385]: Comparing 1b9r_A and 1i4g_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 21 (6 H + 15 S) secondary structure elements in 1i4g_A, of which 11 satisfy the size requirements. 1.50087 [ 2.75014] ((1 . 11) (2 . 12) (3 . 15) (8 . 21)) 5.271 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6663 [and 1/min{score2}: 0.3636] [330, 2421]: Comparing 1b9r_A and 1i7h_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1i7h_A, of which 7 satisfy the size requirements. 2.06188 [ 2.11055] ((1 . 1) (2 . 2) (3 . 3) (6 . 6) (8 . 8)) 1.957 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.4850 [and 1/min{score2}: 0.4738] [330, 2554]: Comparing 1b9r_A and 1ip9_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 6 (2 H + 4 S) secondary structure elements in 1ip9_A, of which 6 satisfy the size requirements. 1.50539 [ 1.50539] ((1 . 2) (2 . 4) (3 . 3) (5 . 5)) 8.320 {0/4:6} B:1 SIMILARITY (1/min{score1}): 0.6643 [and 1/min{score2}: 0.6643] [330, 2764]: Comparing 1b9r_A and 1j8c_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1j8c_A, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 2786]: Comparing 1b9r_A and 1jal_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 28 (16 H + 12 S) secondary structure elements in 1jal_A, of which 9 satisfy the size requirements. 1.20106 [ 1.80032] ((1 . 20) (2 . 21) (3 . 22) (5 . 26) (8 . 28)) 4.687 {0/7:10} B:0 1.50066 [ 2.25020] ((1 . 20) (2 . 21) (3 . 22) (5 . 26)) 4.919 {0/4:6} B:0 1.50168 [ 2.25050] ((1 . 20) (2 . 21) (3 . 22) (6 . 25)) 6.213 {0/3:6} B:0 3.36713 [ 3.49441] ((1 . 21) (3 . 22) (6 . 25) (8 . 20)) 6.081 {1/3:6} B:1 SIMILARITY (1/min{score1}): 0.8326 [and 1/min{score2}: 0.5555] [330, 3015]: Comparing 1b9r_A and 1jq4_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 6 (2 H + 4 S) secondary structure elements in 1jq4_A, of which 6 satisfy the size requirements. 1.50011 [ 1.50011] ((1 . 1) (2 . 2) (3 . 3) (8 . 6)) 3.133 {0/4:6} B:0 2.06204 [ 2.06204] ((1 . 1) (2 . 2) (3 . 3) (6 . 5) (8 . 6)) 4.471 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [330, 3219]: Comparing 1b9r_A and 1k8r_B, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1k8r_B, of which 7 satisfy the size requirements. 4.02035 [ 4.03686] ((1 . 2) (2 . 4) (3 . 3) (5 . 7)) 10.530 {2/5:6} B:1 SIMILARITY (1/min{score1}): 0.2487 [and 1/min{score2}: 0.2477] [330, 3282]: Comparing 1b9r_A and 1kf6_B, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 21 (14 H + 7 S) secondary structure elements in 1kf6_B, of which 7 satisfy the size requirements. 1.50014 [ 1.75009] ((1 . 1) (2 . 2) (3 . 3) (8 . 8)) 3.306 {0/4:6} B:0 1.50289 [ 1.75182] ((1 . 1) (2 . 2) (3 . 3) (8 . 9)) 7.113 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.5714] [330, 3408]: Comparing 1b9r_A and 1krh_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 30 (11 H + 19 S) secondary structure elements in 1krh_A, of which 8 satisfy the size requirements. 1.50001 [ 2.00000] ((1 . 1) (2 . 2) (3 . 3) (8 . 10)) 1.795 {0/4:6} B:0 2.06204 [ 2.17938] ((1 . 1) (2 . 2) (3 . 3) (6 . 7) (8 . 10)) 4.442 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.6667 [and 1/min{score2}: 0.5000] [330, 3533]: Comparing 1b9r_A and 1l4d_B, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 11 (1 H + 10 S) secondary structure elements in 1l4d_B, of which 8 satisfy the size requirements. 1.50237 [ 2.00100] ((1 . 1) (2 . 3) (3 . 6) (8 . 11)) 6.771 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6656 [and 1/min{score2}: 0.4997] [330, 3544]: Comparing 1b9r_A and 1l5p_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1l5p_A, of which 8 satisfy the size requirements. 2.06190 [ 2.17926] ((1 . 1) (2 . 2) (3 . 4) (6 . 6) (8 . 11)) 2.949 {1/5:10} B:0 6.67094 [ 6.68013] ((2 . 1) (3 . 4) (6 . 6) (8 . 11)) 4.893 {2/3:6} B:0 3.75479 [ 3.76496] ((1 . 1) (2 . 2) (3 . 4) (5 . 10) (6 . 6) (8 . 11)) 5.440 {3/8:15} B:1 SIMILARITY (1/min{score1}): 0.4850 [and 1/min{score2}: 0.4589] [330, 3565]: Comparing 1b9r_A and 1l7y_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1l7y_A, of which 6 satisfy the size requirements. 5.01022 [ 5.01022] ((1 . 2) (2 . 4) (3 . 3) (5 . 6)) 8.045 {2/4:6} B:1 SIMILARITY (1/min{score1}): 0.1996 [and 1/min{score2}: 0.1996] [330, 3616]: Comparing 1b9r_A and 1lfd_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1lfd_A, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 3626]: Comparing 1b9r_A and 1lgr, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 36 (18 H + 18 S) secondary structure elements in 1lgr, of which 7 satisfy the size requirements. 5.01024 [ 5.01880] ((2 . 2) (3 . 1) (5 . 5) (8 . 11)) 8.387 {2/4:6} B:1 SIMILARITY (1/min{score1}): 0.1996 [and 1/min{score2}: 0.1993] [330, 3837]: Comparing 1b9r_A and 1m4v_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 19 (5 H + 14 S) secondary structure elements in 1m4v_A, of which 9 satisfy the size requirements. 1.20455 [ 1.80135] ((1 . 10) (2 . 11) (3 . 13) (6 . 16) (8 . 19)) 6.748 {0/5:10} B:0 1.50138 [ 2.25041] ((1 . 10) (2 . 11) (3 . 13) (8 . 19)) 5.918 {0/4:6} B:0 5.01017 [ 5.05056] ((1 . 12) (2 . 14) (3 . 13) (5 . 16)) 7.120 {2/4:6} B:1 6.66843 [ 6.67552] ((1 . 14) (2 . 19) (3 . 13) (5 . 16) (8 . 15)) 5.710 {4/6:10} B:2 SIMILARITY (1/min{score1}): 0.8302 [and 1/min{score2}: 0.5551] [330, 3886]: Comparing 1b9r_A and 1m94_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1m94_A, of which 6 satisfy the size requirements. 1.50009 [ 1.50009] ((1 . 1) (2 . 2) (3 . 3) (8 . 7)) 2.958 {0/4:6} B:0 6.00587 [ 6.00587] ((1 . 1) (2 . 2) (3 . 3) (5 . 6)) 5.700 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [330, 3919]: Comparing 1b9r_A and 1mg4_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (3 H + 4 S) secondary structure elements in 1mg4_A, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 4135]: Comparing 1b9r_A and 1n62_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1n62_A, of which 7 satisfy the size requirements. 1.50803 [ 1.75508] ((1 . 1) (2 . 2) (3 . 3) (6 . 7)) 9.199 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6631 [and 1/min{score2}: 0.5698] [330, 4215]: Comparing 1b9r_A and 1nek_B, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 16 (9 H + 7 S) secondary structure elements in 1nek_B, of which 7 satisfy the size requirements. 1.50009 [ 1.75006] ((1 . 1) (2 . 2) (3 . 3) (8 . 6)) 3.003 {0/4:6} B:0 1.50133 [ 1.75084] ((1 . 1) (2 . 2) (3 . 3) (8 . 7)) 5.863 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.5714] [330, 4619]: Comparing 1b9r_A and 1oey_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1oey_A, of which 6 satisfy the size requirements. 1.50003 [ 1.50003] ((1 . 1) (2 . 2) (3 . 3) (8 . 8)) 2.189 {0/4:6} B:0 3.75984 [ 3.75984] ((1 . 1) (2 . 2) (3 . 3) (5 . 7) (8 . 8)) 5.017 {3/8:10} B:0 4.01969 [ 4.01969] ((1 . 1) (2 . 2) (3 . 3) (5 . 7)) 5.579 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.6667 [and 1/min{score2}: 0.6667] [330, 4620]: Comparing 1b9r_A and 1oey_J, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1oey_J, of which 7 satisfy the size requirements. 2.06325 [ 2.11183] ((1 . 1) (2 . 2) (3 . 3) (6 . 6) (8 . 7)) 7.505 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.4847 [and 1/min{score2}: 0.4735] [330, 4648]: Comparing 1b9r_A and 1ogw_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1ogw_A, of which 6 satisfy the size requirements. 1.50007 [ 1.50007] ((1 . 1) (2 . 2) (3 . 3) (8 . 8)) 2.780 {0/4:6} B:0 6.00587 [ 6.00587] ((1 . 1) (2 . 2) (3 . 3) (5 . 7)) 5.425 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [330, 4754]: Comparing 1b9r_A and 1oqq_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 9 (4 H + 5 S) secondary structure elements in 1oqq_A, of which 8 satisfy the size requirements. 2.06188 [ 2.17924] ((1 . 1) (2 . 2) (3 . 3) (6 . 5) (8 . 9)) 2.195 {1/5:10} B:0 3.75478 [ 3.76494] ((1 . 1) (2 . 2) (3 . 3) (5 . 8) (6 . 5) (8 . 9)) 5.030 {3/8:15} B:1 SIMILARITY (1/min{score1}): 0.4850 [and 1/min{score2}: 0.4589] [330, 5081]: Comparing 1b9r_A and 1pqs_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 6 (2 H + 4 S) secondary structure elements in 1pqs_A, of which 6 satisfy the size requirements. 2.57782 [ 2.57782] ((2 . 1) (3 . 2) (6 . 5) (8 . 6)) 6.823 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.3879 [and 1/min{score2}: 0.3879] [330, 5304]: Comparing 1b9r_A and 1qf6_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 59 (24 H + 35 S) secondary structure elements in 1qf6_A, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 5373]: Comparing 1b9r_A and 1qla_B, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 19 (12 H + 7 S) secondary structure elements in 1qla_B, of which 8 satisfy the size requirements. 1.50013 [ 2.00006] ((1 . 1) (2 . 2) (3 . 3) (8 . 8)) 3.284 {0/4:6} B:0 1.50305 [ 2.00129] ((1 . 1) (2 . 2) (3 . 3) (8 . 9)) 7.214 {0/4:6} B:0 2.57788 [ 2.72450] ((1 . 1) (2 . 2) (3 . 3) (8 . 10)) 7.029 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.5000] [330, 5427]: Comparing 1b9r_A and 1qqr_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 11 (1 H + 10 S) secondary structure elements in 1qqr_A, of which 10 satisfy the size requirements. 1.50301 [ 2.50065] ((1 . 1) (2 . 2) (3 . 4) (8 . 11)) 7.191 {0/3:6} B:0 6.67097 [ 6.69942] ((1 . 1) (2 . 2) (3 . 4) (8 . 6)) 7.359 {2/3:6} B:0 SIMILARITY (1/min{score1}): 0.6653 [and 1/min{score2}: 0.3999] [330, 5872]: Comparing 1b9r_A and 1t0y_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 6 (1 H + 5 S) secondary structure elements in 1t0y_A, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 5914]: Comparing 1b9r_A and 1tif, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 7 (3 H + 4 S) secondary structure elements in 1tif, of which 6 satisfy the size requirements. 3.36702 [ 3.36702] ((1 . 2) (2 . 3) (3 . 4) (8 . 6)) 4.205 {1/3:6} B:0 6.00595 [ 6.00595] ((1 . 2) (2 . 3) (3 . 4) (5 . 7)) 8.579 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.2970 [and 1/min{score2}: 0.2970] [330, 5987]: Comparing 1b9r_A and 1uel_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1uel_A, of which 7 satisfy the size requirements. 1.50009 [ 1.75005] ((1 . 1) (2 . 2) (3 . 3) (8 . 7)) 2.955 {0/4:6} B:0 6.00587 [ 6.01084] ((1 . 1) (2 . 2) (3 . 3) (5 . 6)) 5.742 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.5714] [330, 6159]: Comparing 1b9r_A and 1v2y_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1v2y_A, of which 7 satisfy the size requirements. 1.50032 [ 1.75020] ((1 . 1) (2 . 2) (3 . 3) (8 . 8)) 4.116 {0/4:6} B:0 1.50278 [ 1.75176] ((1 . 1) (2 . 2) (3 . 3) (6 . 7)) 7.049 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6665 [and 1/min{score2}: 0.5714] [330, 6195]: Comparing 1b9r_A and 1v8c_A, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1v8c_A, of which 8 satisfy the size requirements. 1.50006 [ 2.00002] ((1 . 1) (2 . 3) (3 . 4) (8 . 12)) 2.669 {0/4:6} B:0 5.01017 [ 5.03177] ((1 . 1) (2 . 3) (3 . 4) (8 . 13)) 7.050 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.5000] [330, 6509]: Comparing 1b9r_A and 2pia, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 26 (7 H + 19 S) secondary structure elements in 2pia, of which 6 satisfy the size requirements. NO SIMILARITY! [330, 6526]: Comparing 1b9r_A and 2sak, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 9 (1 H + 8 S) secondary structure elements in 2sak, of which 7 satisfy the size requirements. 1.50062 [ 1.75039] ((1 . 1) (2 . 2) (3 . 4) (8 . 9)) 4.832 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6664 [and 1/min{score2}: 0.5713] [330, 6597]: Comparing 1b9r_A and 3seb, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 19 (5 H + 14 S) secondary structure elements in 3seb, of which 10 satisfy the size requirements. 1.50100 [ 2.50022] ((1 . 11) (2 . 12) (3 . 14) (8 . 19)) 5.458 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6662 [and 1/min{score2}: 0.4000] [330, 6602]: Comparing 1b9r_A and 3tss, based on their crossing files. There are 8 (4 H + 4 S) secondary structure elements in 1b9r_A, of which 6 satisfy the size requirements. There are 21 (4 H + 17 S) secondary structure elements in 3tss, of which 8 satisfy the size requirements. 1.50107 [ 2.00045] ((1 . 11) (2 . 12) (3 . 15) (8 . 21)) 5.548 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6662 [and 1/min{score2}: 0.4999] -------------------------------------------------------------------------------------------------------------------------