------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3533 1l4d_B) ( 162 1an8 ) 0.6248 0.6248 5.0120 ( 0 5 10) 0 0.6248 0.6248 8 8 ( 3533 1l4d_B) ( 239 1ayf_A) 0.6244 0.5552 6.3752 ( 0 7 10) 0 0.6244 0.5552 8 9 ( 3533 1l4d_B) ( 330 1b9r_A) 0.4997 0.6656 6.7713 ( 0 4 6) 0 0.4997 0.6656 8 6 ( 3533 1l4d_B) ( 508 1c1y_B) 0.6243 0.7130 6.5136 ( 0 7 10) 0 0.6243 0.7130 8 7 ( 3533 1l4d_B) ( 715 1czp_A) 0.6241 0.7125 7.0545 ( 0 7 10) 0 0.6241 0.7125 8 7 ( 3533 1l4d_B) ( 746 1d4b_A) 0.1497 0.1499 9.4212 ( 2 3 6) 1 0.1497 0.1499 8 6 ( 3533 1l4d_B) ( 896 1doi ) 0.6243 0.4166 6.6733 ( 0 7 10) 0 0.6243 0.4166 8 12 ( 3533 1l4d_B) ( 1067 1e7u_A) 0.6245 0.4999 5.9336 ( 0 7 10) 0 0.6245 0.4999 8 10 ( 3533 1l4d_B) ( 1218 1enf_A) 0.7500 0.6000 2.6133 ( 0 9 15) 0 0.7500 0.6000 8 10 ( 3533 1l4d_B) ( 1257 1et9_A) 0.5228 0.5171 6.5731 ( 3 16 28) 0 0.5228 0.5171 8 9 ( 3533 1l4d_B) ( 1263 1eu3_A) 0.6248 0.5554 4.9946 ( 0 5 10) 0 0.6248 0.5554 8 9 ( 3533 1l4d_B) ( 1354 1f0z_A) nil ( 3533 1l4d_B) ( 1481 1feh_A) 0.6243 0.6243 6.6344 ( 0 7 10) 0 0.6243 0.6243 8 8 ( 3533 1l4d_B) ( 1556 1fm0_D) nil ( 3533 1l4d_B) ( 1582 1fo4_A) 0.6238 0.8285 7.5107 ( 0 6 10) 0 0.6238 0.8285 8 6 ( 3533 1l4d_B) ( 1815 1gg3_A) 0.6246 0.8317 5.7395 ( 0 7 10) 0 0.6246 0.8317 8 6 ( 3533 1l4d_B) ( 1881 1gnu_A) 0.6248 0.6248 4.5271 ( 0 8 10) 0 0.6248 0.6248 8 8 ( 3533 1l4d_B) ( 2078 1h4r_A) 0.6246 0.8317 5.7153 ( 0 8 10) 0 0.6246 0.8317 8 6 ( 3533 1l4d_B) ( 2385 1i4g_A) 0.8038 0.6195 4.5996 ( 1 11 21) 0 0.8038 0.6195 8 11 ( 3533 1l4d_B) ( 2421 1i7h_A) 0.6242 0.7128 6.8288 ( 0 7 10) 0 0.6242 0.7128 8 7 ( 3533 1l4d_B) ( 2554 1ip9_A) 0.6244 0.8310 6.2812 ( 0 5 10) 0 0.6244 0.8310 8 6 ( 3533 1l4d_B) ( 2764 1j8c_A) 0.6246 0.8318 5.6703 ( 0 8 10) 0 0.6246 0.8318 8 6 ( 3533 1l4d_B) ( 2786 1jal_A) 0.6242 0.5551 6.8664 ( 0 6 10) 0 0.6242 0.5551 8 9 ( 3533 1l4d_B) ( 3015 1jq4_A) 0.6237 0.8281 7.6667 ( 0 7 10) 0 0.6237 0.8281 8 6 ( 3533 1l4d_B) ( 3219 1k8r_B) 0.6243 0.7130 6.5194 ( 0 7 10) 0 0.6243 0.7130 8 7 ( 3533 1l4d_B) ( 3282 1kf6_B) 0.6236 0.7115 7.9037 ( 0 7 10) 0 0.6236 0.7115 8 7 ( 3533 1l4d_B) ( 3408 1krh_A) 0.6242 0.6242 6.8308 ( 0 8 10) 0 0.6242 0.6242 8 8 ( 3533 1l4d_B) ( 3533 1l4d_B) 1.0000 1.0000 0.0000 ( 0 19 28) 0 1.0000 1.0000 8 8 ( 3533 1l4d_B) ( 3544 1l5p_A) 0.6241 0.6241 7.0986 ( 0 8 10) 0 0.6241 0.6241 8 8 ( 3533 1l4d_B) ( 3565 1l7y_A) 0.6248 0.8326 4.6139 ( 0 5 10) 0 0.6248 0.8326 8 6 ( 3533 1l4d_B) ( 3616 1lfd_A) 0.6243 0.8304 6.6519 ( 0 6 10) 0 0.6243 0.8304 8 6 ( 3533 1l4d_B) ( 3626 1lgr ) 0.2910 0.2945 8.2454 ( 1 3 6) 0 0.2910 0.2945 8 7 ( 3533 1l4d_B) ( 3837 1m4v_A) 0.6232 0.5546 8.4005 ( 0 6 10) 0 0.6232 0.5546 8 9 ( 3533 1l4d_B) ( 3886 1m94_A) 0.6247 0.8320 5.4576 ( 0 7 10) 0 0.6247 0.8320 8 6 ( 3533 1l4d_B) ( 3919 1mg4_A) 0.6246 0.8319 5.5823 ( 0 7 10) 0 0.6246 0.8319 8 6 ( 3533 1l4d_B) ( 4135 1n62_A) 0.6242 0.7127 6.9272 ( 0 7 10) 0 0.6242 0.7127 8 7 ( 3533 1l4d_B) ( 4215 1nek_B) 0.6235 0.7114 8.0134 ( 0 8 10) 0 0.6235 0.7114 8 7 ( 3533 1l4d_B) ( 4619 1oey_A) 0.6246 0.8316 5.8098 ( 0 7 10) 0 0.6246 0.8316 8 6 ( 3533 1l4d_B) ( 4620 1oey_J) 0.6241 0.7126 7.0002 ( 0 7 10) 0 0.6241 0.7126 8 7 ( 3533 1l4d_B) ( 4648 1ogw_A) 0.6246 0.8319 5.5728 ( 0 8 10) 0 0.6246 0.8319 8 6 ( 3533 1l4d_B) ( 4754 1oqq_A) 0.6244 0.6244 6.4110 ( 0 7 10) 0 0.6244 0.6244 8 8 ( 3533 1l4d_B) ( 5081 1pqs_A) 0.4995 0.6646 8.0699 ( 0 4 6) 0 0.4995 0.6646 8 6 ( 3533 1l4d_B) ( 5304 1qf6_A) nil ( 3533 1l4d_B) ( 5373 1qla_B) 0.6238 0.6238 7.5193 ( 0 7 10) 0 0.6238 0.6238 8 8 ( 3533 1l4d_B) ( 5427 1qqr_A) 0.7933 0.7086 1.7836 ( 2 18 28) 0 0.7933 0.7086 8 10 ( 3533 1l4d_B) ( 5872 1t0y_A) 0.2909 0.2969 10.9890 ( 1 3 6) 0 0.2909 0.2969 8 6 ( 3533 1l4d_B) ( 5914 1tif ) nil ( 3533 1l4d_B) ( 5987 1uel_A) 0.6246 0.7135 5.6844 ( 0 7 10) 0 0.6246 0.7135 8 7 ( 3533 1l4d_B) ( 6159 1v2y_A) 0.6244 0.7132 6.2782 ( 0 7 10) 0 0.6244 0.7132 8 7 ( 3533 1l4d_B) ( 6195 1v8c_A) 0.1662 0.1662 9.5712 ( 3 5 6) 0 0.2981 0.2981 8 8 ( 3533 1l4d_B) ( 6509 2pia ) 0.6243 0.8303 6.6753 ( 0 7 10) 0 0.6243 0.8303 8 6 ( 3533 1l4d_B) ( 6526 2sak ) 0.4990 0.5694 9.6670 ( 0 3 6) 0 0.4990 0.5694 8 7 ( 3533 1l4d_B) ( 6597 3seb ) 0.4923 0.4824 6.6935 ( 3 15 28) 0 0.4971 0.4824 8 10 ( 3533 1l4d_B) ( 6602 3tss ) 0.6246 0.6246 5.7093 ( 0 5 10) 0 0.6246 0.6246 8 8 -------------------------------------------------------------------------------------------------------------------------