------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3544 1l5p_A) ( 162 1an8 ) 0.6248 0.6248 4.6530 ( 0 6 10) 0 0.6248 0.6248 8 8 ( 3544 1l5p_A) ( 239 1ayf_A) 0.9999 0.8888 2.2855 ( 0 22 28) 0 0.9999 0.8888 8 9 ( 3544 1l5p_A) ( 330 1b9r_A) 0.4589 0.4850 2.9490 ( 1 5 10) 0 0.4589 0.4850 8 6 ( 3544 1l5p_A) ( 508 1c1y_B) 0.8600 0.9715 3.6784 ( 1 17 21) 0 0.8600 0.9715 8 7 ( 3544 1l5p_A) ( 715 1czp_A) 0.7500 0.8571 2.1208 ( 0 13 15) 0 0.7500 0.8571 8 7 ( 3544 1l5p_A) ( 746 1d4b_A) 0.6249 0.8330 3.7085 ( 0 9 10) 0 0.6249 0.8330 8 6 ( 3544 1l5p_A) ( 896 1doi ) 0.7500 0.5000 2.0014 ( 0 13 15) 0 0.7500 0.5000 8 12 ( 3544 1l5p_A) ( 1067 1e7u_A) 0.6250 0.5000 2.7694 ( 0 8 10) 0 0.7499 0.6000 8 10 ( 3544 1l5p_A) ( 1218 1enf_A) 0.6247 0.4999 5.2493 ( 0 7 10) 0 0.6247 0.4999 8 10 ( 3544 1l5p_A) ( 1257 1et9_A) 0.7497 0.6665 4.1611 ( 0 12 15) 0 0.7497 0.6665 8 9 ( 3544 1l5p_A) ( 1263 1eu3_A) 0.7495 0.6664 4.7520 ( 0 10 15) 0 0.7495 0.6664 8 9 ( 3544 1l5p_A) ( 1354 1f0z_A) 0.4204 0.4454 6.3532 ( 1 5 6) 0 0.4204 0.4454 8 7 ( 3544 1l5p_A) ( 1481 1feh_A) 0.7500 0.7500 2.6118 ( 0 13 15) 0 0.7500 0.7500 8 8 ( 3544 1l5p_A) ( 1556 1fm0_D) 0.6250 0.7143 2.1705 ( 0 7 10) 0 0.6250 0.7143 8 7 ( 3544 1l5p_A) ( 1582 1fo4_A) 0.7498 0.9993 3.6458 ( 0 11 15) 0 0.7498 0.9993 8 6 ( 3544 1l5p_A) ( 1815 1gg3_A) 0.6250 0.8332 3.0162 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 3544 1l5p_A) ( 1881 1gnu_A) 0.6249 0.6249 3.9922 ( 0 9 10) 0 0.6249 0.6249 8 8 ( 3544 1l5p_A) ( 2078 1h4r_A) 0.7497 0.9989 4.0902 ( 0 14 15) 0 0.7497 0.9989 8 6 ( 3544 1l5p_A) ( 2385 1i4g_A) 0.4201 0.3418 9.0508 ( 1 5 6) 0 0.4201 0.3418 8 11 ( 3544 1l5p_A) ( 2421 1i7h_A) 0.8750 0.9999 1.7472 ( 0 17 21) 0 0.8750 0.9999 8 7 ( 3544 1l5p_A) ( 2554 1ip9_A) 0.7000 0.8404 4.2056 ( 1 10 15) 0 0.7000 0.8404 8 6 ( 3544 1l5p_A) ( 2764 1j8c_A) 0.7352 0.9434 3.4767 ( 1 14 15) 0 0.7352 0.9434 8 6 ( 3544 1l5p_A) ( 2786 1jal_A) 0.7499 0.6666 3.2665 ( 0 12 15) 0 0.7499 0.6666 8 9 ( 3544 1l5p_A) ( 3015 1jq4_A) 0.7498 0.9992 3.8566 ( 0 10 15) 0 0.7498 0.9992 8 6 ( 3544 1l5p_A) ( 3219 1k8r_B) 0.7497 0.8566 4.2689 ( 0 12 15) 0 0.7497 0.8566 8 7 ( 3544 1l5p_A) ( 3282 1kf6_B) 0.7499 0.8570 2.9658 ( 0 13 15) 0 0.7499 0.8570 8 7 ( 3544 1l5p_A) ( 3408 1krh_A) 0.7500 0.7500 1.6093 ( 0 14 15) 0 0.7500 0.7500 8 8 ( 3544 1l5p_A) ( 3533 1l4d_B) 0.6241 0.6241 7.0986 ( 0 8 10) 0 0.6241 0.6241 8 8 ( 3544 1l5p_A) ( 3544 1l5p_A) 1.0000 1.0000 0.0000 ( 0 23 28) 0 1.0000 1.0000 8 8 ( 3544 1l5p_A) ( 3565 1l7y_A) 0.6249 0.8328 4.3902 ( 0 6 10) 0 0.6249 0.8328 8 6 ( 3544 1l5p_A) ( 3616 1lfd_A) 0.7496 0.9983 4.5687 ( 0 12 15) 0 0.7496 0.9983 8 6 ( 3544 1l5p_A) ( 3626 1lgr ) 0.4996 0.5707 7.5241 ( 0 5 6) 0 0.4996 0.5707 8 7 ( 3544 1l5p_A) ( 3837 1m4v_A) 0.7495 0.6664 4.7253 ( 0 10 15) 0 0.7495 0.6664 8 9 ( 3544 1l5p_A) ( 3886 1m94_A) 0.6245 0.8312 6.0851 ( 0 9 10) 0 0.6245 0.8312 8 6 ( 3544 1l5p_A) ( 3919 1mg4_A) 0.6250 0.8332 3.1058 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 3544 1l5p_A) ( 4135 1n62_A) 0.8747 0.9994 3.4777 ( 0 17 21) 0 0.8747 0.9994 8 7 ( 3544 1l5p_A) ( 4215 1nek_B) 0.7500 0.8571 2.4133 ( 0 14 15) 0 0.7500 0.8571 8 7 ( 3544 1l5p_A) ( 4619 1oey_A) 0.6250 0.8333 2.6157 ( 0 8 10) 0 0.6250 0.8333 8 6 ( 3544 1l5p_A) ( 4620 1oey_J) 0.7498 0.8568 3.8592 ( 0 13 15) 0 0.7498 0.8568 8 7 ( 3544 1l5p_A) ( 4648 1ogw_A) 0.6250 0.8333 2.6044 ( 0 9 10) 0 0.6250 0.8333 8 6 ( 3544 1l5p_A) ( 4754 1oqq_A) 0.9999 0.9999 1.7935 ( 0 22 28) 0 0.9999 0.9999 8 8 ( 3544 1l5p_A) ( 5081 1pqs_A) 0.6249 0.8329 4.1175 ( 0 9 10) 0 0.6249 0.8329 8 6 ( 3544 1l5p_A) ( 5304 1qf6_A) 0.6250 0.8332 3.2245 ( 0 9 10) 0 0.6250 0.8332 8 6 ( 3544 1l5p_A) ( 5373 1qla_B) 0.7499 0.7499 2.8139 ( 0 13 15) 0 0.7499 0.7499 8 8 ( 3544 1l5p_A) ( 5427 1qqr_A) 0.6241 0.4997 7.1393 ( 0 7 10) 0 0.6241 0.4997 8 10 ( 3544 1l5p_A) ( 5872 1t0y_A) 0.7497 0.9986 4.3785 ( 0 12 15) 0 0.7497 0.9986 8 6 ( 3544 1l5p_A) ( 5914 1tif ) 0.5526 0.6327 3.4705 ( 1 7 10) 0 0.5526 0.6327 8 6 ( 3544 1l5p_A) ( 5987 1uel_A) 0.6250 0.7142 2.6684 ( 0 8 10) 0 0.6250 0.7142 8 7 ( 3544 1l5p_A) ( 6159 1v2y_A) 0.6249 0.7140 4.3026 ( 0 8 10) 0 0.6249 0.7140 8 7 ( 3544 1l5p_A) ( 6195 1v8c_A) 0.6250 0.6250 2.4927 ( 0 7 10) 0 0.6250 0.6250 8 8 ( 3544 1l5p_A) ( 6509 2pia ) 0.7500 0.9998 2.5156 ( 0 13 15) 0 0.7500 0.9998 8 6 ( 3544 1l5p_A) ( 6526 2sak ) 0.6248 0.7138 5.0738 ( 0 8 10) 0 0.6248 0.7138 8 7 ( 3544 1l5p_A) ( 6597 3seb ) 0.7492 0.5997 5.4089 ( 0 11 15) 0 0.7492 0.5997 8 10 ( 3544 1l5p_A) ( 6602 3tss ) 0.7495 0.7495 4.8658 ( 0 10 15) 0 0.7495 0.7495 8 8 -------------------------------------------------------------------------------------------------------------------------