------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3565 1l7y_A) ( 162 1an8 ) 0.6659 0.4998 6.2115 ( 0 4 6) 0 0.6659 0.4998 6 8 ( 3565 1l7y_A) ( 239 1ayf_A) 0.8329 0.5555 4.0920 ( 0 7 10) 0 0.8329 0.5555 6 9 ( 3565 1l7y_A) ( 330 1b9r_A) 0.1996 0.1996 8.0448 ( 2 4 6) 1 0.1996 0.1996 6 6 ( 3565 1l7y_A) ( 508 1c1y_B) 0.3975 0.3954 3.3448 ( 3 12 15) 0 0.3975 0.3954 6 7 ( 3565 1l7y_A) ( 715 1czp_A) 0.8327 0.7140 4.5140 ( 0 6 10) 0 0.8327 0.7140 6 7 ( 3565 1l7y_A) ( 746 1d4b_A) 0.6666 0.6666 2.8514 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 3565 1l7y_A) ( 896 1doi ) 0.6664 0.3333 4.7471 ( 0 4 6) 0 0.6664 0.3333 6 12 ( 3565 1l7y_A) ( 1067 1e7u_A) 0.5820 0.5045 3.3086 ( 2 12 15) 0 0.5820 0.5045 6 10 ( 3565 1l7y_A) ( 1218 1enf_A) 0.8326 0.4999 4.7210 ( 0 7 10) 0 0.8326 0.4999 6 10 ( 3565 1l7y_A) ( 1257 1et9_A) 0.8327 0.5555 4.5763 ( 0 7 10) 0 0.8327 0.5555 6 9 ( 3565 1l7y_A) ( 1263 1eu3_A) 0.8296 0.5551 7.0632 ( 0 6 10) 0 0.8296 0.5551 6 9 ( 3565 1l7y_A) ( 1354 1f0z_A) 0.6664 0.5713 4.9851 ( 0 4 6) 0 0.6664 0.5713 6 7 ( 3565 1l7y_A) ( 1481 1feh_A) 0.8331 0.6249 3.5578 ( 0 6 10) 0 0.8331 0.6249 6 8 ( 3565 1l7y_A) ( 1556 1fm0_D) 0.8330 0.7141 3.9506 ( 0 6 10) 0 0.8330 0.7141 6 7 ( 3565 1l7y_A) ( 1582 1fo4_A) 0.8327 0.8327 4.5461 ( 0 7 10) 0 0.8327 0.8327 6 6 ( 3565 1l7y_A) ( 1815 1gg3_A) 0.9997 0.9997 3.0471 ( 0 12 15) 0 0.9997 0.9997 6 6 ( 3565 1l7y_A) ( 1881 1gnu_A) 0.9999 0.7500 1.7041 ( 0 12 15) 0 0.9999 0.7500 6 8 ( 3565 1l7y_A) ( 2078 1h4r_A) 0.8332 0.8332 2.9007 ( 0 7 10) 0 0.8332 0.8332 6 6 ( 3565 1l7y_A) ( 2385 1i4g_A) 0.6660 0.3636 6.0423 ( 0 3 6) 0 0.6660 0.3636 6 11 ( 3565 1l7y_A) ( 2421 1i7h_A) 0.8315 0.7135 5.8506 ( 0 7 10) 0 0.8315 0.7135 6 7 ( 3565 1l7y_A) ( 2554 1ip9_A) 0.8333 0.8333 2.6230 ( 0 7 10) 0 0.8333 0.8333 6 6 ( 3565 1l7y_A) ( 2764 1j8c_A) 0.8333 0.8333 2.6297 ( 0 7 10) 0 0.8333 0.8333 6 6 ( 3565 1l7y_A) ( 2786 1jal_A) 0.8331 0.5555 3.4022 ( 0 7 10) 0 0.8331 0.5555 6 9 ( 3565 1l7y_A) ( 3015 1jq4_A) 0.8232 0.8232 9.0826 ( 0 7 10) 0 0.8232 0.8232 6 6 ( 3565 1l7y_A) ( 3219 1k8r_B) 0.8332 0.7142 2.9442 ( 0 7 10) 0 0.8734 0.7897 6 7 ( 3565 1l7y_A) ( 3282 1kf6_B) 0.8328 0.7141 4.2401 ( 0 7 10) 0 0.8328 0.7141 6 7 ( 3565 1l7y_A) ( 3408 1krh_A) 0.8329 0.6249 4.1820 ( 0 6 10) 0 0.8329 0.6249 6 8 ( 3565 1l7y_A) ( 3533 1l4d_B) 0.8326 0.6248 4.6139 ( 0 5 10) 0 0.8326 0.6248 6 8 ( 3565 1l7y_A) ( 3544 1l5p_A) 0.8328 0.6249 4.3902 ( 0 6 10) 0 0.8328 0.6249 6 8 ( 3565 1l7y_A) ( 3565 1l7y_A) 1.0000 1.0000 0.0000 ( 0 12 15) 0 1.0000 1.0000 6 6 ( 3565 1l7y_A) ( 3616 1lfd_A) 0.8332 0.8332 3.0204 ( 0 7 10) 0 0.8332 0.8332 6 6 ( 3565 1l7y_A) ( 3626 1lgr ) 0.6666 0.5714 3.6304 ( 0 4 6) 0 0.6666 0.5714 6 7 ( 3565 1l7y_A) ( 3837 1m4v_A) 0.8301 0.5551 6.7772 ( 0 6 10) 0 0.8301 0.5551 6 9 ( 3565 1l7y_A) ( 3886 1m94_A) 0.9995 0.9995 3.4375 ( 0 12 15) 0 0.9995 0.9995 6 6 ( 3565 1l7y_A) ( 3919 1mg4_A) 0.8333 0.8333 2.3138 ( 0 7 10) 0 0.8333 0.8333 6 6 ( 3565 1l7y_A) ( 4135 1n62_A) 0.5819 0.5685 3.8132 ( 2 12 15) 0 0.5819 0.5685 6 7 ( 3565 1l7y_A) ( 4215 1nek_B) 0.8323 0.7138 5.0585 ( 0 6 10) 0 0.8323 0.7138 6 7 ( 3565 1l7y_A) ( 4619 1oey_A) 0.8331 0.8331 3.5239 ( 0 6 10) 0 0.8331 0.8331 6 6 ( 3565 1l7y_A) ( 4620 1oey_J) 0.8328 0.7140 4.3243 ( 0 7 10) 0 0.8328 0.7140 6 7 ( 3565 1l7y_A) ( 4648 1ogw_A) 0.9995 0.9995 3.3853 ( 0 12 15) 0 0.9995 0.9995 6 6 ( 3565 1l7y_A) ( 4754 1oqq_A) 0.4925 0.4779 3.9500 ( 2 10 15) 0 0.4925 0.4779 6 8 ( 3565 1l7y_A) ( 5081 1pqs_A) 0.6662 0.6662 5.6153 ( 0 4 6) 0 0.6662 0.6662 6 6 ( 3565 1l7y_A) ( 5304 1qf6_A) 0.6666 0.6666 3.7948 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 3565 1l7y_A) ( 5373 1qla_B) 0.8328 0.6249 4.3039 ( 0 6 10) 0 0.8328 0.6249 6 8 ( 3565 1l7y_A) ( 5427 1qqr_A) 0.8322 0.4999 5.2627 ( 0 6 10) 0 0.8322 0.4999 6 10 ( 3565 1l7y_A) ( 5872 1t0y_A) 0.8333 0.8333 1.8661 ( 0 7 10) 0 0.8333 0.8333 6 6 ( 3565 1l7y_A) ( 5914 1tif ) 0.5653 0.5653 3.6943 ( 1 6 10) 0 0.5653 0.5653 6 6 ( 3565 1l7y_A) ( 5987 1uel_A) 0.9995 0.8569 3.4488 ( 0 12 15) 0 0.9995 0.8569 6 7 ( 3565 1l7y_A) ( 6159 1v2y_A) 0.9987 0.8565 4.3043 ( 0 12 15) 0 0.9987 0.8565 6 7 ( 3565 1l7y_A) ( 6195 1v8c_A) 0.8327 0.6248 4.5358 ( 0 6 10) 0 0.8327 0.6248 6 8 ( 3565 1l7y_A) ( 6509 2pia ) 0.8329 0.8329 4.1990 ( 0 6 10) 0 0.8329 0.8329 6 6 ( 3565 1l7y_A) ( 6526 2sak ) 0.8324 0.7139 4.9678 ( 0 6 10) 0 0.8324 0.7139 6 7 ( 3565 1l7y_A) ( 6597 3seb ) 0.6664 0.4000 4.9447 ( 0 4 6) 0 0.6664 0.4000 6 10 ( 3565 1l7y_A) ( 6602 3tss ) 0.8321 0.6247 5.3273 ( 0 6 10) 0 0.8321 0.6247 6 8 -------------------------------------------------------------------------------------------------------------------------