------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3837 1m4v_A) ( 162 1an8 ) 0.6769 0.7002 2.6763 ( 2 15 28) 0 0.6769 0.7002 9 8 ( 3837 1m4v_A) ( 239 1ayf_A) 0.5554 0.5554 5.2815 ( 0 8 10) 0 0.5554 0.5554 9 9 ( 3837 1m4v_A) ( 330 1b9r_A) 0.5551 0.8302 6.7478 ( 0 5 10) 0 0.5551 0.8302 9 6 ( 3837 1m4v_A) ( 508 1c1y_B) 0.4444 0.5711 6.0114 ( 0 5 6) 0 0.4444 0.5711 9 7 ( 3837 1m4v_A) ( 715 1czp_A) 0.4444 0.5713 5.1892 ( 0 5 6) 0 0.4444 0.5713 9 7 ( 3837 1m4v_A) ( 746 1d4b_A) 0.1659 0.1665 6.9814 ( 3 5 6) 0 0.2441 0.2488 9 6 ( 3837 1m4v_A) ( 896 1doi ) 0.5110 0.4045 4.6068 ( 1 7 10) 0 0.5110 0.4204 9 12 ( 3837 1m4v_A) ( 1067 1e7u_A) 0.4444 0.4000 5.1698 ( 0 5 6) 0 0.4444 0.4000 9 10 ( 3837 1m4v_A) ( 1218 1enf_A) 0.9035 0.8383 5.8768 ( 2 24 36) 0 0.9035 0.8383 9 10 ( 3837 1m4v_A) ( 1257 1et9_A) 0.9160 0.9160 5.1959 ( 2 25 36) 0 0.9160 0.9160 9 9 ( 3837 1m4v_A) ( 1263 1eu3_A) 0.6633 0.6633 3.1890 ( 3 21 36) 0 0.6633 0.6633 9 9 ( 3837 1m4v_A) ( 1354 1f0z_A) 0.4444 0.5713 4.5150 ( 0 3 6) 0 0.4444 0.5713 9 7 ( 3837 1m4v_A) ( 1481 1feh_A) 0.6661 0.7489 5.8677 ( 0 10 15) 0 0.6661 0.7489 9 8 ( 3837 1m4v_A) ( 1556 1fm0_D) 0.5554 0.7138 5.1931 ( 0 7 10) 0 0.5554 0.7138 9 7 ( 3837 1m4v_A) ( 1582 1fo4_A) 0.6660 0.9952 5.9654 ( 0 10 15) 0 0.6660 0.9952 9 6 ( 3837 1m4v_A) ( 1815 1gg3_A) 0.4444 0.6663 5.1144 ( 0 5 6) 0 0.4444 0.6663 9 6 ( 3837 1m4v_A) ( 1881 1gnu_A) 0.5553 0.6245 6.1608 ( 0 7 10) 0 0.5553 0.6245 9 8 ( 3837 1m4v_A) ( 2078 1h4r_A) 0.6661 0.9959 5.7273 ( 0 10 15) 0 0.6661 0.9959 9 6 ( 3837 1m4v_A) ( 2385 1i4g_A) 0.6224 0.5277 8.4027 ( 1 9 15) 0 0.6224 0.5444 9 11 ( 3837 1m4v_A) ( 2421 1i7h_A) 0.5554 0.7136 5.5330 ( 0 7 10) 0 0.5554 0.7136 9 7 ( 3837 1m4v_A) ( 2554 1ip9_A) 0.4444 0.6662 5.4757 ( 0 4 6) 0 0.6485 0.8903 9 6 ( 3837 1m4v_A) ( 2764 1j8c_A) 0.4444 0.6660 6.0377 ( 0 5 6) 0 0.4444 0.6660 9 6 ( 3837 1m4v_A) ( 2786 1jal_A) nil ( 3837 1m4v_A) ( 3015 1jq4_A) 0.5553 0.8313 6.0691 ( 0 7 10) 0 0.5553 0.8313 9 6 ( 3837 1m4v_A) ( 3219 1k8r_B) 0.4444 0.5711 6.0648 ( 0 5 6) 0 0.4444 0.5711 9 7 ( 3837 1m4v_A) ( 3282 1kf6_B) 0.4444 0.5712 5.5068 ( 0 4 6) 0 0.4444 0.5712 9 7 ( 3837 1m4v_A) ( 3408 1krh_A) 0.6664 0.7494 4.9940 ( 0 10 15) 0 0.6664 0.7494 9 8 ( 3837 1m4v_A) ( 3533 1l4d_B) 0.5546 0.6232 8.4005 ( 0 6 10) 0 0.5546 0.6232 9 8 ( 3837 1m4v_A) ( 3544 1l5p_A) 0.6664 0.7495 4.7253 ( 0 10 15) 0 0.6664 0.7495 9 8 ( 3837 1m4v_A) ( 3565 1l7y_A) 0.5551 0.8301 6.7772 ( 0 6 10) 0 0.5551 0.8301 9 6 ( 3837 1m4v_A) ( 3616 1lfd_A) 0.5553 0.8313 6.0230 ( 0 8 10) 0 0.5553 0.8313 9 6 ( 3837 1m4v_A) ( 3626 1lgr ) 0.2862 0.2946 3.7695 ( 1 3 6) 0 0.3523 0.3787 9 7 ( 3837 1m4v_A) ( 3837 1m4v_A) 1.0000 1.0000 0.0000 ( 0 27 36) 0 1.0000 1.0000 9 9 ( 3837 1m4v_A) ( 3886 1m94_A) 0.6445 0.8717 7.5158 ( 1 11 15) 0 0.6445 0.8717 9 6 ( 3837 1m4v_A) ( 3919 1mg4_A) 0.5553 0.8317 5.6981 ( 0 6 10) 0 0.5553 0.8317 9 6 ( 3837 1m4v_A) ( 4135 1n62_A) 0.5553 0.7135 5.8463 ( 0 5 10) 0 0.5553 0.7135 9 7 ( 3837 1m4v_A) ( 4215 1nek_B) 0.6665 0.8564 4.5409 ( 0 10 15) 0 0.6665 0.8564 9 7 ( 3837 1m4v_A) ( 4619 1oey_A) 0.5554 0.8325 4.7997 ( 0 7 10) 0 0.5554 0.8325 9 6 ( 3837 1m4v_A) ( 4620 1oey_J) 0.7628 0.9513 6.2768 ( 1 15 21) 0 0.7628 0.9513 9 7 ( 3837 1m4v_A) ( 4648 1ogw_A) 0.5554 0.8321 5.3398 ( 0 8 10) 0 0.5554 0.8321 9 6 ( 3837 1m4v_A) ( 4754 1oqq_A) 0.4444 0.5000 4.3531 ( 0 5 6) 0 0.4444 0.5000 9 8 ( 3837 1m4v_A) ( 5081 1pqs_A) 0.1798 0.1800 5.8630 ( 5 9 15) 0 0.1798 0.1800 9 6 ( 3837 1m4v_A) ( 5304 1qf6_A) nil ( 3837 1m4v_A) ( 5373 1qla_B) 0.4444 0.4999 4.8411 ( 0 5 6) 0 0.4444 0.4999 9 8 ( 3837 1m4v_A) ( 5427 1qqr_A) 0.7336 0.6726 7.0388 ( 1 11 21) 0 0.7336 0.6726 9 10 ( 3837 1m4v_A) ( 5872 1t0y_A) 0.6660 0.9948 6.0866 ( 0 10 15) 0 0.6660 0.9948 9 6 ( 3837 1m4v_A) ( 5914 1tif ) 0.1980 0.1996 8.5120 ( 2 4 6) 0 0.1980 0.1996 9 6 ( 3837 1m4v_A) ( 5987 1uel_A) 0.5555 0.7139 4.7762 ( 0 7 10) 0 0.5555 0.7139 9 7 ( 3837 1m4v_A) ( 6159 1v2y_A) 0.5552 0.7130 6.5907 ( 0 7 10) 0 0.5552 0.7130 9 7 ( 3837 1m4v_A) ( 6195 1v8c_A) 0.5555 0.6248 4.5192 ( 0 7 10) 0 0.5555 0.6248 9 8 ( 3837 1m4v_A) ( 6509 2pia ) 0.4444 0.6661 5.7849 ( 0 5 6) 0 0.4444 0.6661 9 6 ( 3837 1m4v_A) ( 6526 2sak ) 0.6655 0.8529 7.0163 ( 0 10 15) 0 0.6655 0.8529 9 7 ( 3837 1m4v_A) ( 6597 3seb ) 0.9047 0.8391 5.1403 ( 2 24 36) 0 0.9047 0.8391 9 10 ( 3837 1m4v_A) ( 6602 3tss ) 0.6666 0.7499 2.9131 ( 0 9 15) 0 0.6666 0.7499 9 8 -------------------------------------------------------------------------------------------------------------------------