------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5373 1qla_B) ( 162 1an8 ) 0.6248 0.6248 4.7804 ( 0 6 10) 0 0.6248 0.6248 8 8 ( 5373 1qla_B) ( 239 1ayf_A) 0.7500 0.6667 2.0427 ( 0 13 15) 0 0.7500 0.6667 8 9 ( 5373 1qla_B) ( 330 1b9r_A) 0.5000 0.6666 3.2844 ( 0 4 6) 0 0.5000 0.6666 8 6 ( 5373 1qla_B) ( 508 1c1y_B) 0.7499 0.8569 3.4176 ( 0 13 15) 0 0.7499 0.8569 8 7 ( 5373 1qla_B) ( 715 1czp_A) 0.7500 0.8571 2.5281 ( 0 13 15) 0 0.7500 0.8571 8 7 ( 5373 1qla_B) ( 746 1d4b_A) 0.6250 0.8332 3.2585 ( 0 9 10) 0 0.6250 0.8332 8 6 ( 5373 1qla_B) ( 896 1doi ) 0.7499 0.5000 2.9341 ( 0 13 15) 0 0.7499 0.5000 8 12 ( 5373 1qla_B) ( 1067 1e7u_A) 0.6250 0.5000 2.6402 ( 0 8 10) 0 0.6250 0.5000 8 10 ( 5373 1qla_B) ( 1218 1enf_A) 0.4997 0.3999 7.2959 ( 0 3 6) 0 0.4997 0.3999 8 10 ( 5373 1qla_B) ( 1257 1et9_A) 0.7497 0.6665 4.1202 ( 0 11 15) 0 0.7497 0.6665 8 9 ( 5373 1qla_B) ( 1263 1eu3_A) 0.4999 0.4444 5.5308 ( 0 4 6) 0 0.4999 0.4444 8 9 ( 5373 1qla_B) ( 1354 1f0z_A) 0.7499 0.8569 3.5528 ( 0 12 15) 0 0.7499 0.8569 8 7 ( 5373 1qla_B) ( 1481 1feh_A) 0.7500 0.7500 2.6259 ( 0 13 15) 0 0.7500 0.7500 8 8 ( 5373 1qla_B) ( 1556 1fm0_D) 0.6250 0.7142 2.8822 ( 0 7 10) 0 0.6250 0.7142 8 7 ( 5373 1qla_B) ( 1582 1fo4_A) 0.7498 0.9991 3.9135 ( 0 11 15) 0 0.7498 0.9991 8 6 ( 5373 1qla_B) ( 1815 1gg3_A) 0.6250 0.8332 3.2917 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 5373 1qla_B) ( 1881 1gnu_A) 0.6249 0.6249 3.8881 ( 0 8 10) 0 0.6249 0.6249 8 8 ( 5373 1qla_B) ( 2078 1h4r_A) 0.7499 0.9995 3.4422 ( 0 13 15) 0 0.7499 0.9995 8 6 ( 5373 1qla_B) ( 2385 1i4g_A) 0.1497 0.1489 6.5038 ( 2 3 6) 1 0.1497 0.1489 8 11 ( 5373 1qla_B) ( 2421 1i7h_A) 0.7499 0.8570 3.0388 ( 0 13 15) 0 0.7499 0.8570 8 7 ( 5373 1qla_B) ( 2554 1ip9_A) 0.6248 0.8325 4.8184 ( 0 6 10) 0 0.6248 0.8325 8 6 ( 5373 1qla_B) ( 2764 1j8c_A) 0.7305 0.9274 3.1770 ( 1 13 15) 0 0.7305 0.9274 8 6 ( 5373 1qla_B) ( 2786 1jal_A) 0.7499 0.6666 3.2216 ( 0 12 15) 0 0.7499 0.6666 8 9 ( 5373 1qla_B) ( 3015 1jq4_A) 0.6249 0.8330 3.7903 ( 0 7 10) 0 0.6249 0.8330 8 6 ( 5373 1qla_B) ( 3219 1k8r_B) 0.7497 0.8566 4.1542 ( 0 12 15) 0 0.7497 0.8566 8 7 ( 5373 1qla_B) ( 3282 1kf6_B) 0.8750 0.9999 1.3738 ( 0 19 21) 0 0.8750 0.9999 8 7 ( 5373 1qla_B) ( 3408 1krh_A) 0.7500 0.7500 2.3999 ( 0 13 15) 0 0.7500 0.7500 8 8 ( 5373 1qla_B) ( 3533 1l4d_B) 0.6238 0.6238 7.5193 ( 0 7 10) 0 0.6238 0.6238 8 8 ( 5373 1qla_B) ( 3544 1l5p_A) 0.7499 0.7499 2.8139 ( 0 13 15) 0 0.7499 0.7499 8 8 ( 5373 1qla_B) ( 3565 1l7y_A) 0.6249 0.8328 4.3039 ( 0 6 10) 0 0.6249 0.8328 8 6 ( 5373 1qla_B) ( 3616 1lfd_A) 0.7498 0.9991 3.9332 ( 0 12 15) 0 0.7498 0.9991 8 6 ( 5373 1qla_B) ( 3626 1lgr ) 0.5000 0.5714 3.2695 ( 0 4 6) 0 0.5000 0.5714 8 7 ( 5373 1qla_B) ( 3837 1m4v_A) 0.4999 0.4444 4.8411 ( 0 5 6) 0 0.4999 0.4444 8 9 ( 5373 1qla_B) ( 3886 1m94_A) 0.6250 0.8332 2.9017 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 5373 1qla_B) ( 3919 1mg4_A) 0.6249 0.8330 3.7658 ( 0 7 10) 0 0.6249 0.8330 8 6 ( 5373 1qla_B) ( 4135 1n62_A) 0.7499 0.8570 2.9286 ( 0 13 15) 0 0.7499 0.8570 8 7 ( 5373 1qla_B) ( 4215 1nek_B) 0.8750 0.9999 2.1418 ( 0 19 21) 0 0.8750 0.9999 8 7 ( 5373 1qla_B) ( 4619 1oey_A) 0.6250 0.8333 2.5452 ( 0 8 10) 0 0.6250 0.8333 8 6 ( 5373 1qla_B) ( 4620 1oey_J) 0.7499 0.8569 3.2938 ( 0 13 15) 0 0.7499 0.8569 8 7 ( 5373 1qla_B) ( 4648 1ogw_A) 0.6250 0.8332 3.0244 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 5373 1qla_B) ( 4754 1oqq_A) 0.7500 0.7500 2.2501 ( 0 13 15) 0 0.7500 0.7500 8 8 ( 5373 1qla_B) ( 5081 1pqs_A) 0.4999 0.6665 4.5554 ( 0 6 6) 0 0.4999 0.6665 8 6 ( 5373 1qla_B) ( 5304 1qf6_A) nil ( 5373 1qla_B) ( 5373 1qla_B) 1.0000 1.0000 0.0000 ( 0 26 28) 0 1.0000 1.0000 8 8 ( 5373 1qla_B) ( 5427 1qqr_A) 0.6240 0.4997 7.2381 ( 0 6 10) 0 0.6240 0.4997 8 10 ( 5373 1qla_B) ( 5872 1t0y_A) 0.7498 0.9992 3.8511 ( 0 11 15) 0 0.7498 0.9992 8 6 ( 5373 1qla_B) ( 5914 1tif ) 0.5000 0.6666 3.4332 ( 0 4 6) 0 0.5000 0.6666 8 6 ( 5373 1qla_B) ( 5987 1uel_A) 0.6250 0.7142 3.1597 ( 0 7 10) 0 0.6250 0.7142 8 7 ( 5373 1qla_B) ( 6159 1v2y_A) 0.6250 0.7142 3.4016 ( 0 7 10) 0 0.6250 0.7142 8 7 ( 5373 1qla_B) ( 6195 1v8c_A) 0.6250 0.6250 3.3303 ( 0 7 10) 0 0.6250 0.6250 8 8 ( 5373 1qla_B) ( 6509 2pia ) 0.7499 0.9995 3.2981 ( 0 13 15) 0 0.7499 0.9995 8 6 ( 5373 1qla_B) ( 6526 2sak ) 0.5764 0.6300 8.1409 ( 1 8 10) 0 0.5764 0.6300 8 7 ( 5373 1qla_B) ( 6597 3seb ) 0.7496 0.5999 4.5848 ( 0 11 15) 0 0.7496 0.5999 8 10 ( 5373 1qla_B) ( 6602 3tss ) 0.2462 0.2462 10.9582 ( 2 5 6) 0 0.2462 0.2462 8 8 -------------------------------------------------------------------------------------------------------------------------