------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5914 1tif ) ( 162 1an8 ) 0.6641 0.4994 8.4743 ( 0 2 6) 0 0.6641 0.4994 6 8 ( 5914 1tif ) ( 239 1ayf_A) 0.6858 0.5272 4.2650 ( 1 8 10) 0 0.6858 0.5272 6 9 ( 5914 1tif ) ( 330 1b9r_A) 0.2970 0.2970 4.2054 ( 1 3 6) 0 0.2970 0.2970 6 6 ( 5914 1tif ) ( 508 1c1y_B) 0.7180 0.6521 10.1836 ( 1 9 10) 0 0.7180 0.6521 6 7 ( 5914 1tif ) ( 715 1czp_A) 0.6666 0.5714 2.5828 ( 0 4 6) 0 0.6666 0.5714 6 7 ( 5914 1tif ) ( 746 1d4b_A) 0.6660 0.6660 5.9758 ( 0 5 6) 0 0.6660 0.6660 6 6 ( 5914 1tif ) ( 896 1doi ) 0.4664 0.3186 8.4216 ( 1 5 6) 0 0.4664 0.3186 6 12 ( 5914 1tif ) ( 1067 1e7u_A) 0.4664 0.3670 8.1884 ( 1 5 6) 0 0.4664 0.3670 6 10 ( 5914 1tif ) ( 1218 1enf_A) nil ( 5914 1tif ) ( 1257 1et9_A) 0.6641 0.4441 8.4357 ( 0 2 6) 0 0.6641 0.4840 6 9 ( 5914 1tif ) ( 1263 1eu3_A) 0.6638 0.4441 8.6995 ( 0 2 6) 0 0.6638 0.4441 6 9 ( 5914 1tif ) ( 1354 1f0z_A) 0.4667 0.4454 6.1526 ( 1 5 6) 0 0.4667 0.4454 6 7 ( 5914 1tif ) ( 1481 1feh_A) 0.6666 0.5000 2.7793 ( 0 4 6) 0 0.6666 0.5000 6 8 ( 5914 1tif ) ( 1556 1fm0_D) 0.6667 0.5714 2.1538 ( 0 3 6) 0 0.6667 0.5714 6 7 ( 5914 1tif ) ( 1582 1fo4_A) 0.6667 0.6667 2.3488 ( 0 4 6) 0 0.6667 0.6667 6 6 ( 5914 1tif ) ( 1815 1gg3_A) 0.6860 0.6860 3.2608 ( 1 8 10) 0 0.6860 0.6860 6 6 ( 5914 1tif ) ( 1881 1gnu_A) 0.6859 0.5774 3.5236 ( 1 8 10) 0 0.6859 0.5774 6 8 ( 5914 1tif ) ( 2078 1h4r_A) 0.6860 0.6860 3.2718 ( 1 8 10) 0 0.6860 0.6860 6 6 ( 5914 1tif ) ( 2385 1i4g_A) 0.6639 0.3635 8.6550 ( 0 2 6) 0 0.6661 0.3636 6 11 ( 5914 1tif ) ( 2421 1i7h_A) 0.6327 0.5944 3.6655 ( 1 7 10) 0 0.6327 0.5944 6 7 ( 5914 1tif ) ( 2554 1ip9_A) 0.5653 0.5653 3.1713 ( 1 6 10) 0 0.5653 0.5653 6 6 ( 5914 1tif ) ( 2764 1j8c_A) 0.6860 0.6860 2.9458 ( 1 8 10) 0 0.6860 0.6860 6 6 ( 5914 1tif ) ( 2786 1jal_A) 0.6327 0.5110 3.4310 ( 1 7 10) 0 0.6327 0.5110 6 9 ( 5914 1tif ) ( 3015 1jq4_A) 0.6666 0.6666 3.0177 ( 0 3 6) 0 0.6666 0.6666 6 6 ( 5914 1tif ) ( 3219 1k8r_B) 0.6860 0.6316 3.1185 ( 1 8 10) 0 0.6860 0.6316 6 7 ( 5914 1tif ) ( 3282 1kf6_B) 0.6666 0.5714 3.6236 ( 0 5 6) 0 0.6666 0.5714 6 7 ( 5914 1tif ) ( 3408 1krh_A) 0.6667 0.5000 1.6108 ( 0 4 6) 0 0.6667 0.5526 6 8 ( 5914 1tif ) ( 3533 1l4d_B) nil ( 5914 1tif ) ( 3544 1l5p_A) 0.6327 0.5526 3.4705 ( 1 7 10) 0 0.6327 0.5526 6 8 ( 5914 1tif ) ( 3565 1l7y_A) 0.5653 0.5653 3.6943 ( 1 6 10) 0 0.5653 0.5653 6 6 ( 5914 1tif ) ( 3616 1lfd_A) 0.6327 0.6327 3.7476 ( 1 7 10) 0 0.6327 0.6327 6 6 ( 5914 1tif ) ( 3626 1lgr ) 0.6665 0.5714 4.2018 ( 0 2 6) 0 0.6665 0.5714 6 7 ( 5914 1tif ) ( 3837 1m4v_A) 0.1996 0.1980 8.5120 ( 2 4 6) 0 0.1996 0.1980 6 9 ( 5914 1tif ) ( 3886 1m94_A) 0.6859 0.6859 3.9276 ( 1 8 10) 0 0.6859 0.6859 6 6 ( 5914 1tif ) ( 3919 1mg4_A) nil ( 5914 1tif ) ( 4135 1n62_A) 0.3880 0.3790 3.1659 ( 1 4 6) 0 0.3880 0.3790 6 7 ( 5914 1tif ) ( 4215 1nek_B) 0.6645 0.5704 8.0848 ( 0 5 6) 0 0.6645 0.5704 6 7 ( 5914 1tif ) ( 4619 1oey_A) 0.6327 0.6327 3.7544 ( 1 7 10) 0 0.6327 0.6327 6 6 ( 5914 1tif ) ( 4620 1oey_J) 0.6666 0.5714 2.7415 ( 0 5 6) 0 0.6666 0.5714 6 7 ( 5914 1tif ) ( 4648 1ogw_A) 0.6859 0.6859 3.4180 ( 1 8 10) 0 0.6859 0.6859 6 6 ( 5914 1tif ) ( 4754 1oqq_A) 0.6327 0.5526 3.7674 ( 1 7 10) 0 0.6327 0.5526 6 8 ( 5914 1tif ) ( 5081 1pqs_A) 0.2970 0.2970 3.1979 ( 1 3 6) 0 0.2970 0.2970 6 6 ( 5914 1tif ) ( 5304 1qf6_A) 0.6854 0.6854 5.5993 ( 1 8 10) 0 0.6854 0.6854 6 6 ( 5914 1tif ) ( 5373 1qla_B) 0.6666 0.5000 3.4332 ( 0 4 6) 0 0.6666 0.5000 6 8 ( 5914 1tif ) ( 5427 1qqr_A) nil ( 5914 1tif ) ( 5872 1t0y_A) 0.6327 0.6327 2.7961 ( 1 7 10) 0 0.6327 0.6327 6 6 ( 5914 1tif ) ( 5914 1tif ) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 5914 1tif ) ( 5987 1uel_A) 0.6667 0.5714 1.6551 ( 0 4 6) 0 0.6667 0.5944 6 7 ( 5914 1tif ) ( 6159 1v2y_A) 0.3879 0.3790 6.8829 ( 1 4 6) 0 0.3879 0.3790 6 7 ( 5914 1tif ) ( 6195 1v8c_A) 0.6666 0.5000 2.4956 ( 0 3 6) 0 0.6666 0.5000 6 8 ( 5914 1tif ) ( 6509 2pia ) 0.6327 0.6327 3.6168 ( 1 7 10) 0 0.6327 0.6327 6 6 ( 5914 1tif ) ( 6526 2sak ) 0.6322 0.5941 6.0398 ( 1 7 10) 0 0.6322 0.5941 6 7 ( 5914 1tif ) ( 6597 3seb ) 0.1333 0.1329 5.6853 ( 3 4 6) 0 0.1665 0.1654 6 10 ( 5914 1tif ) ( 6602 3tss ) nil -------------------------------------------------------------------------------------------------------------------------