------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 896 1doi ) ( 162 1an8 ) 0.3333 0.4997 6.8699 ( 0 4 6) 0 0.3333 0.4997 12 8 ( 896 1doi ) ( 239 1ayf_A) 0.5000 0.6666 2.5952 ( 0 13 15) 0 0.5000 0.6666 12 9 ( 896 1doi ) ( 330 1b9r_A) 0.3776 0.4849 4.7113 ( 1 5 10) 0 0.3776 0.6666 12 6 ( 896 1doi ) ( 508 1c1y_B) 0.5000 0.8567 4.0374 ( 0 13 15) 0 0.5000 0.8567 12 7 ( 896 1doi ) ( 715 1czp_A) 0.5820 0.9816 2.0158 ( 1 19 21) 0 0.5820 0.9816 12 7 ( 896 1doi ) ( 746 1d4b_A) nil ( 896 1doi ) ( 896 1doi ) 1.0000 1.0000 0.0000 ( 0 58 66) 0 1.0000 1.0000 12 12 ( 896 1doi ) ( 1067 1e7u_A) 0.4134 0.4921 7.8325 ( 1 10 10) 0 0.4134 0.4921 12 10 ( 896 1doi ) ( 1218 1enf_A) 0.3332 0.3997 9.2214 ( 0 3 6) 0 0.3429 0.3997 12 10 ( 896 1doi ) ( 1257 1et9_A) 0.5000 0.6665 4.1055 ( 0 11 15) 0 0.5000 0.6665 12 9 ( 896 1doi ) ( 1263 1eu3_A) 0.4166 0.5555 4.3704 ( 0 5 10) 0 0.4166 0.5555 12 9 ( 896 1doi ) ( 1354 1f0z_A) 0.3186 0.4455 5.3416 ( 1 5 6) 0 0.3186 0.4455 12 7 ( 896 1doi ) ( 1481 1feh_A) 0.5833 0.8745 3.9077 ( 0 18 21) 0 0.5833 0.8745 12 8 ( 896 1doi ) ( 1556 1fm0_D) 0.4167 0.7142 2.7541 ( 0 7 10) 0 0.4167 0.7142 12 7 ( 896 1doi ) ( 1582 1fo4_A) 0.5000 0.9988 4.2360 ( 0 11 15) 0 0.5000 0.9988 12 6 ( 896 1doi ) ( 1815 1gg3_A) 0.4167 0.8330 3.9663 ( 0 8 10) 0 0.4167 0.8330 12 6 ( 896 1doi ) ( 1881 1gnu_A) 0.4166 0.6245 6.0087 ( 0 9 10) 0 0.4166 0.6245 12 8 ( 896 1doi ) ( 2078 1h4r_A) 0.5000 0.9985 4.4344 ( 0 13 15) 0 0.5000 0.9985 12 6 ( 896 1doi ) ( 2385 1i4g_A) 0.3333 0.3636 6.3071 ( 0 3 6) 0 0.3333 0.3636 12 11 ( 896 1doi ) ( 2421 1i7h_A) 0.5000 0.8571 1.9187 ( 0 13 15) 0 0.5000 0.8571 12 7 ( 896 1doi ) ( 2554 1ip9_A) 0.3333 0.6653 7.2526 ( 0 5 6) 0 0.4166 0.8319 12 6 ( 896 1doi ) ( 2764 1j8c_A) 0.4973 0.9271 3.9108 ( 1 13 15) 0 0.4973 0.9271 12 6 ( 896 1doi ) ( 2786 1jal_A) 0.5000 0.6665 4.2001 ( 0 12 15) 0 0.5478 0.6665 12 9 ( 896 1doi ) ( 3015 1jq4_A) 0.4963 0.9059 3.5304 ( 1 12 15) 0 0.4963 0.9059 12 6 ( 896 1doi ) ( 3219 1k8r_B) 0.4999 0.8561 4.8887 ( 0 12 15) 0 0.4999 0.8561 12 7 ( 896 1doi ) ( 3282 1kf6_B) 0.5000 0.8569 3.4424 ( 0 13 15) 0 0.5000 0.8569 12 7 ( 896 1doi ) ( 3408 1krh_A) 0.5820 0.8654 1.6872 ( 1 19 21) 0 0.5820 0.8654 12 8 ( 896 1doi ) ( 3533 1l4d_B) 0.4166 0.6243 6.6733 ( 0 7 10) 0 0.4166 0.6243 12 8 ( 896 1doi ) ( 3544 1l5p_A) 0.5000 0.7500 2.0014 ( 0 13 15) 0 0.5000 0.7500 12 8 ( 896 1doi ) ( 3565 1l7y_A) 0.3333 0.6664 4.7471 ( 0 4 6) 0 0.3333 0.6664 12 6 ( 896 1doi ) ( 3616 1lfd_A) 0.3333 0.6661 5.8837 ( 0 5 6) 0 0.4166 0.8321 12 6 ( 896 1doi ) ( 3626 1lgr ) 0.3332 0.5700 8.9061 ( 0 4 6) 0 0.3332 0.5700 12 7 ( 896 1doi ) ( 3837 1m4v_A) 0.4045 0.5110 4.6068 ( 1 7 10) 0 0.4204 0.5110 12 9 ( 896 1doi ) ( 3886 1m94_A) 0.4167 0.8330 3.7679 ( 0 8 10) 0 0.4167 0.8330 12 6 ( 896 1doi ) ( 3919 1mg4_A) 0.4167 0.8330 3.7610 ( 0 7 10) 0 0.4167 0.8330 12 6 ( 896 1doi ) ( 4135 1n62_A) 0.5000 0.8565 4.3226 ( 0 13 15) 0 0.5000 0.8565 12 7 ( 896 1doi ) ( 4215 1nek_B) 0.5000 0.8571 2.6751 ( 0 13 15) 0 0.5000 0.8571 12 7 ( 896 1doi ) ( 4619 1oey_A) 0.4167 0.8332 3.0599 ( 0 8 10) 0 0.4167 0.8332 12 6 ( 896 1doi ) ( 4620 1oey_J) 0.4999 0.8563 4.6235 ( 0 13 15) 0 0.4999 0.8563 12 7 ( 896 1doi ) ( 4648 1ogw_A) 0.4167 0.8331 3.3508 ( 0 8 10) 0 0.4167 0.8331 12 6 ( 896 1doi ) ( 4754 1oqq_A) 0.5000 0.7500 2.1278 ( 0 13 15) 0 0.5000 0.7500 12 8 ( 896 1doi ) ( 5081 1pqs_A) 0.4167 0.8330 3.7165 ( 0 9 10) 0 0.4167 0.8330 12 6 ( 896 1doi ) ( 5304 1qf6_A) nil ( 896 1doi ) ( 5373 1qla_B) 0.5000 0.7499 2.9341 ( 0 13 15) 0 0.5000 0.7499 12 8 ( 896 1doi ) ( 5427 1qqr_A) 0.4166 0.4998 6.4754 ( 0 6 10) 0 0.4824 0.5598 12 10 ( 896 1doi ) ( 5872 1t0y_A) 0.3333 0.6656 6.8454 ( 0 4 6) 0 0.3333 0.6656 12 6 ( 896 1doi ) ( 5914 1tif ) 0.3186 0.4664 8.4216 ( 1 5 6) 0 0.3333 0.6662 12 6 ( 896 1doi ) ( 5987 1uel_A) 0.4167 0.7142 3.4910 ( 0 7 10) 0 0.4167 0.7142 12 7 ( 896 1doi ) ( 6159 1v2y_A) 0.4167 0.7141 4.1064 ( 0 7 10) 0 0.4167 0.7141 12 7 ( 896 1doi ) ( 6195 1v8c_A) 0.4390 0.5161 4.2491 ( 2 11 15) 0 0.4390 0.6250 12 8 ( 896 1doi ) ( 6509 2pia ) 0.5000 0.9999 2.3177 ( 0 13 15) 0 0.5000 0.9999 12 6 ( 896 1doi ) ( 6526 2sak ) 0.4166 0.7137 5.2818 ( 0 8 10) 0 0.4388 0.7137 12 7 ( 896 1doi ) ( 6597 3seb ) 0.4999 0.5997 5.4806 ( 0 11 15) 0 0.4999 0.5997 12 10 ( 896 1doi ) ( 6602 3tss ) 0.3333 0.4998 6.6382 ( 0 3 6) 0 0.3333 0.4998 12 8 -------------------------------------------------------------------------------------------------------------------------