------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1675 1g0u_D) ( 164 1ao0_A) 0.3125 0.2632 5.3675 ( 0 5 10) 0 0.4475 0.4403 16 19 ( 1675 1g0u_D) ( 677 1ct9_A) 0.3250 0.3363 5.3229 ( 2 8 15) 0 0.5506 0.5601 16 15 ( 1675 1g0u_D) ( 1100 1ecf_A) 0.3070 0.2608 6.6239 ( 1 6 10) 0 0.6631 0.6179 16 19 ( 1675 1g0u_D) ( 1670 1g0u_1) 0.5187 0.5065 3.1162 ( 7 38 78) 0 0.5187 0.5065 16 18 ( 1675 1g0u_D) ( 1671 1g0u_2) 0.9114 0.8628 3.4189 ( 4 64 105) 0 0.9114 0.8628 16 17 ( 1675 1g0u_D) ( 1672 1g0u_A) 0.9666 0.9666 1.9937 ( 5 81 120) 0 0.9666 0.9666 16 16 ( 1675 1g0u_D) ( 1673 1g0u_B) 0.9816 0.9816 1.8047 ( 4 76 120) 0 0.9816 0.9816 16 16 ( 1675 1g0u_D) ( 1674 1g0u_C) 0.9989 0.9989 1.2022 ( 2 78 120) 0 0.9989 0.9989 16 16 ( 1675 1g0u_D) ( 1675 1g0u_D) 1.0000 1.0000 0.0000 ( 0 84 120) 0 1.0000 1.0000 16 16 ( 1675 1g0u_D) ( 1676 1g0u_E) 0.9934 0.9934 3.0663 ( 3 75 120) 0 0.9934 0.9934 16 16 ( 1675 1g0u_D) ( 1677 1g0u_F) 0.9948 0.9948 2.2201 ( 3 79 120) 0 0.9948 0.9948 16 16 ( 1675 1g0u_D) ( 1678 1g0u_G) 0.9276 0.9276 2.3012 ( 6 78 120) 0 0.9276 0.9276 16 16 ( 1675 1g0u_D) ( 1679 1g0u_H) 0.8720 0.8213 2.0808 ( 2 51 91) 0 0.8720 0.8213 16 17 ( 1675 1g0u_D) ( 1680 1g0u_I) 0.7229 0.7513 2.7828 ( 4 37 78) 0 0.7229 0.7513 16 15 ( 1675 1g0u_D) ( 1681 1g0u_J) 0.8292 0.8292 1.7589 ( 4 50 91) 0 0.8292 0.8292 16 16 ( 1675 1g0u_D) ( 1682 1g0u_K) 0.8287 0.7972 3.6925 ( 6 63 105) 0 0.8287 0.7972 16 17 ( 1675 1g0u_D) ( 1683 1g0u_L) 0.7841 0.8284 2.5916 ( 3 39 78) 0 0.7841 0.8284 16 15 ( 1675 1g0u_D) ( 1709 1g3k_A) 0.7840 0.8282 3.5199 ( 3 39 78) 0 0.7840 0.8282 16 15 ( 1675 1g0u_D) ( 2712 1j2q_H) 0.9117 0.8630 2.1487 ( 4 64 105) 0 0.9117 0.8630 16 17 ( 1675 1g0u_D) ( 2863 1jgt_A) 0.2500 0.2500 5.0124 ( 0 4 6) 0 0.7331 0.7331 16 16 ( 1675 1g0u_D) ( 3442 1kuu_A) 0.7608 0.7608 4.6758 ( 2 22 78) 0 0.8118 0.8118 16 16 ( 1675 1g0u_D) ( 4627 1ofd_A) 0.3670 0.2549 7.4979 ( 2 8 28) 0 0.6382 0.4201 16 30 ( 1675 1g0u_D) ( 5053 1pma_A) 0.9169 0.9720 2.3616 ( 4 68 105) 0 0.9169 0.9720 16 15 ( 1675 1g0u_D) ( 5173 1q15_A) 0.3125 0.2631 7.0621 ( 0 1 10) 0 0.7130 0.6353 16 19 ( 1675 1g0u_D) ( 5215 1q5q_A) 0.9772 0.9772 3.2034 ( 4 72 120) 0 0.9772 0.9772 16 16 ( 1675 1g0u_D) ( 5216 1q5q_H) 0.9356 0.8323 2.1268 ( 2 63 105) 0 0.9356 0.8323 16 18 ( 1675 1g0u_D) ( 6344 1xff_A) 0.3125 0.2500 5.9506 ( 0 2 10) 0 0.6422 0.5885 16 20 ( 1675 1g0u_D) ( 6520 2pva_A) 0.3756 0.3627 5.4913 ( 10 38 78) 0 0.7447 0.5801 16 23 -------------------------------------------------------------------------------------------------------------------------