------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1709 1g3k_A) ( 164 1ao0_A) 0.3291 0.2618 8.9926 ( 1 7 10) 0 0.5332 0.4590 15 19 ( 1709 1g3k_A) ( 677 1ct9_A) 0.3671 0.3671 5.1819 ( 1 5 15) 0 0.4684 0.4684 15 15 ( 1709 1g3k_A) ( 1100 1ecf_A) 0.3824 0.3100 3.8956 ( 1 6 15) 0 0.4666 0.4430 15 19 ( 1709 1g3k_A) ( 1670 1g0u_1) 0.5665 0.5475 2.9233 ( 8 47 91) 0 0.5665 0.5475 15 18 ( 1709 1g3k_A) ( 1671 1g0u_2) 0.7201 0.6398 3.3341 ( 2 28 55) 0 0.7201 0.6439 15 17 ( 1709 1g3k_A) ( 1672 1g0u_A) 0.5356 0.5300 3.4910 ( 7 39 78) 0 0.5356 0.5300 15 16 ( 1709 1g3k_A) ( 1673 1g0u_B) 0.7597 0.7299 3.3413 ( 4 38 78) 0 0.7597 0.7299 15 16 ( 1709 1g3k_A) ( 1674 1g0u_C) 0.7748 0.7421 3.3011 ( 4 40 78) 0 0.7748 0.7421 15 16 ( 1709 1g3k_A) ( 1675 1g0u_D) 0.8282 0.7840 3.5199 ( 3 39 78) 0 0.8282 0.7840 15 16 ( 1709 1g3k_A) ( 1676 1g0u_E) 0.6406 0.6272 3.2054 ( 5 35 78) 0 0.6406 0.6272 15 16 ( 1709 1g3k_A) ( 1677 1g0u_F) 0.6651 0.6491 3.7301 ( 5 37 78) 0 0.6651 0.6491 15 16 ( 1709 1g3k_A) ( 1678 1g0u_G) 0.7816 0.7476 3.0273 ( 4 41 78) 0 0.7816 0.7476 15 16 ( 1709 1g3k_A) ( 1679 1g0u_H) 0.7610 0.7244 2.7672 ( 7 59 105) 0 0.7610 0.7244 15 17 ( 1709 1g3k_A) ( 1680 1g0u_I) 0.6432 0.6432 2.7860 ( 7 48 91) 0 0.6432 0.6432 15 15 ( 1709 1g3k_A) ( 1681 1g0u_J) 0.7842 0.7637 3.4910 ( 6 53 105) 0 0.7842 0.7637 15 16 ( 1709 1g3k_A) ( 1682 1g0u_K) 0.5559 0.5476 2.8542 ( 10 57 105) 0 0.5559 0.5476 15 17 ( 1709 1g3k_A) ( 1683 1g0u_L) 0.7790 0.7790 3.2371 ( 5 46 91) 0 0.7790 0.7790 15 15 ( 1709 1g3k_A) ( 1709 1g3k_A) 1.0000 1.0000 0.0000 ( 0 66 105) 0 1.0000 1.0000 15 15 ( 1709 1g3k_A) ( 2712 1j2q_H) 0.7341 0.7031 2.9041 ( 7 56 105) 0 0.7341 0.7031 15 17 ( 1709 1g3k_A) ( 2863 1jgt_A) 0.3333 0.3125 6.2405 ( 0 4 10) 0 0.7960 0.7471 15 16 ( 1709 1g3k_A) ( 3442 1kuu_A) 0.7921 0.7442 4.0286 ( 1 18 66) 0 0.7921 0.7442 15 16 ( 1709 1g3k_A) ( 4627 1ofd_A) 0.2667 0.1333 3.7068 ( 0 0 6) 0 0.6090 0.3885 15 30 ( 1709 1g3k_A) ( 5053 1pma_A) 0.6766 0.6766 3.2020 ( 5 38 78) 0 0.6766 0.6766 15 15 ( 1709 1g3k_A) ( 5173 1q15_A) 0.3332 0.2631 8.9819 ( 0 4 10) 0 0.7320 0.6319 15 19 ( 1709 1g3k_A) ( 5215 1q5q_A) 0.8553 0.8042 2.7868 ( 2 36 78) 0 0.8553 0.8042 15 16 ( 1709 1g3k_A) ( 5216 1q5q_H) 0.9960 0.8317 2.7017 ( 2 57 105) 0 0.9960 0.8317 15 18 ( 1709 1g3k_A) ( 6344 1xff_A) 0.4629 0.3491 3.5821 ( 1 11 21) 0 0.6978 0.5937 15 20 ( 1709 1g3k_A) ( 6520 2pva_A) 0.6091 0.4834 4.5283 ( 4 27 66) 0 0.8446 0.6265 15 23 -------------------------------------------------------------------------------------------------------------------------