------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2712 1j2q_H) ( 164 1ao0_A) 0.2859 0.2583 5.8485 ( 1 5 10) 0 0.4651 0.4587 17 19 ( 2712 1j2q_H) ( 677 1ct9_A) 0.3509 0.3962 3.9337 ( 1 9 15) 0 0.6674 0.7335 17 15 ( 2712 1j2q_H) ( 1100 1ecf_A) 0.2658 0.2455 4.8517 ( 2 7 10) 0 0.7688 0.7036 17 19 ( 2712 1j2q_H) ( 1670 1g0u_1) 0.7310 0.7104 2.4814 ( 7 60 105) 0 0.7310 0.7104 17 18 ( 2712 1j2q_H) ( 1671 1g0u_2) 0.9890 0.9890 2.6471 ( 4 87 136) 0 0.9890 0.9890 17 17 ( 2712 1j2q_H) ( 1672 1g0u_A) 0.8823 0.9374 1.7808 ( 1 64 105) 0 0.8823 0.9374 17 16 ( 2712 1j2q_H) ( 1673 1g0u_B) 0.8811 0.9358 1.6138 ( 2 64 105) 0 0.8811 0.9358 17 16 ( 2712 1j2q_H) ( 1674 1g0u_C) 0.8770 0.9303 2.2713 ( 3 67 105) 0 0.8770 0.9303 17 16 ( 2712 1j2q_H) ( 1675 1g0u_D) 0.8630 0.9117 2.1487 ( 4 64 105) 0 0.8630 0.9117 17 16 ( 2712 1j2q_H) ( 1676 1g0u_E) 0.8821 0.9372 2.6866 ( 1 60 105) 0 0.8821 0.9372 17 16 ( 2712 1j2q_H) ( 1677 1g0u_F) 0.8809 0.9356 2.3224 ( 2 63 105) 0 0.8809 0.9356 17 16 ( 2712 1j2q_H) ( 1678 1g0u_G) 0.8408 0.8830 2.5648 ( 5 65 105) 0 0.8408 0.8830 17 16 ( 2712 1j2q_H) ( 1679 1g0u_H) 0.9268 0.9268 1.2804 ( 4 75 120) 0 0.9268 0.9268 17 17 ( 2712 1j2q_H) ( 1680 1g0u_I) 0.7244 0.7610 2.2123 ( 7 59 105) 0 0.7244 0.7610 17 15 ( 2712 1j2q_H) ( 1681 1g0u_J) 0.7482 0.7653 1.6301 ( 8 68 120) 0 0.7482 0.7653 17 16 ( 2712 1j2q_H) ( 1682 1g0u_K) 0.9892 0.9892 3.1996 ( 4 88 136) 0 0.9892 0.9892 17 17 ( 2712 1j2q_H) ( 1683 1g0u_L) 0.7433 0.7856 2.4816 ( 7 62 105) 0 0.7433 0.7856 17 15 ( 2712 1j2q_H) ( 1709 1g3k_A) 0.7031 0.7341 2.9041 ( 7 56 105) 0 0.7031 0.7341 17 15 ( 2712 1j2q_H) ( 2712 1j2q_H) 1.0000 1.0000 0.0000 ( 0 93 136) 0 1.0000 1.0000 17 17 ( 2712 1j2q_H) ( 2863 1jgt_A) 0.4097 0.4348 4.9579 ( 1 11 21) 0 0.6784 0.7138 17 16 ( 2712 1j2q_H) ( 3442 1kuu_A) 0.6290 0.6455 4.6817 ( 3 22 78) 0 0.6290 0.6533 17 16 ( 2712 1j2q_H) ( 4627 1ofd_A) 0.2940 0.1667 10.6162 ( 0 7 10) 0 0.6676 0.4011 17 30 ( 2712 1j2q_H) ( 5053 1pma_A) 0.8223 0.9310 1.6152 ( 2 59 91) 0 0.8223 0.9310 17 15 ( 2712 1j2q_H) ( 5173 1q15_A) 0.2941 0.2632 5.5042 ( 0 1 10) 0 0.5986 0.5493 17 19 ( 2712 1j2q_H) ( 5215 1q5q_A) 0.7619 0.7865 2.3708 ( 6 56 105) 0 0.7619 0.7865 17 16 ( 2712 1j2q_H) ( 5216 1q5q_H) 0.9482 0.9045 2.1765 ( 6 86 136) 0 0.9482 0.9045 17 18 ( 2712 1j2q_H) ( 6344 1xff_A) 0.3135 0.2801 4.8696 ( 2 8 15) 0 0.7598 0.6690 17 20 ( 2712 1j2q_H) ( 6520 2pva_A) 0.4927 0.4525 5.3322 ( 6 31 78) 0 0.5762 0.4525 17 23 -------------------------------------------------------------------------------------------------------------------------