------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [2863, 164]: Comparing 1jgt_A and 1ao0_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 40 (17 H + 23 S) secondary structure elements in 1ao0_A, of which 19 satisfy the size requirements. 1.32362 [ 1.44411] ((1 . 1) (2 . 3) (4 . 6) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 16) (15 . 17) (18 . 19) (19 . 20)) 3.520 {6/52:105} B:0 2.39498 [ 2.78180] ((1 . 3) (4 . 6) (6 . 8) (7 . 9) (8 . 10) (18 . 19) (19 . 20)) 3.883 {2/13:21} B:0 4.00004 [ 4.75002] ((6 . 13) (7 . 14) (11 . 19) (12 . 20)) 4.983 {0/1:6} B:0 4.00004 [ 4.75002] ((4 . 4) (7 . 6) (18 . 15) (19 . 16)) 5.001 {0/0:6} B:0 4.00004 [ 4.75002] ((2 . 13) (4 . 14) (6 . 15) (7 . 16)) 5.020 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7555 [and 1/min{score2}: 0.6925] [2863, 677]: Comparing 1jgt_A and 1ct9_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 43 (26 H + 17 S) secondary structure elements in 1ct9_A, of which 15 satisfy the size requirements. 1.43251 [ 1.38589] ((1 . 1) (2 . 4) (4 . 5) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (18 . 17) (19 . 18)) 2.703 {4/34:78} B:0 1.78927 [ 1.68057] ((1 . 1) (4 . 5) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (12 . 12) (13 . 13) (14 . 14)) 2.369 {1/14:36} B:0 1.83007 [ 1.72936] ((1 . 1) (4 . 5) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (12 . 12) (14 . 14) (15 . 15)) 2.132 {2/19:36} B:0 1.98719 [ 1.91045] ((1 . 1) (7 . 7) (9 . 8) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (18 . 17) (19 . 18)) 3.782 {2/13:36} B:0 3.20005 [ 3.00006] ((1 . 1) (7 . 7) (14 . 12) (18 . 17) (19 . 18)) 4.530 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6981 [and 1/min{score2}: 0.7216] [2863, 1100]: Comparing 1jgt_A and 1ecf_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 38 (17 H + 21 S) secondary structure elements in 1ecf_A, of which 19 satisfy the size requirements. 1.22068 [ 1.36778] ((1 . 1) (2 . 3) (4 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 16) (15 . 17) (18 . 19) (19 . 20)) 3.350 {5/51:105} B:0 3.20022 [ 3.80013] ((1 . 1) (2 . 3) (4 . 4) (18 . 15) (19 . 16)) 6.615 {0/2:10} B:0 3.20030 [ 3.80018] ((1 . 3) (4 . 7) (7 . 9) (8 . 10) (14 . 13)) 7.131 {0/4:10} B:0 3.31637 [ 3.87134] ((4 . 3) (6 . 4) (11 . 9) (18 . 14) (19 . 15)) 9.113 {1/5:10} B:0 3.88718 [ 4.26851] ((4 . 7) (6 . 8) (7 . 9) (8 . 10) (14 . 14)) 3.806 {2/6:10} B:0 SIMILARITY (1/min{score1}): 0.8192 [and 1/min{score2}: 0.7311] [2863, 1670]: Comparing 1jgt_A and 1g0u_1, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 19 (6 H + 13 S) secondary structure elements in 1g0u_1, of which 18 satisfy the size requirements. 2.66691 [ 3.00017] ((4 . 4) (6 . 6) (7 . 7) (10 . 9) (14 . 13) (15 . 14)) 5.872 {0/8:15} B:0 2.66733 [ 3.00046] ((4 . 4) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (15 . 14)) 7.565 {0/10:15} B:0 2.68673 [ 3.01415] ((6 . 6) (7 . 7) (8 . 8) (10 . 9) (14 . 13) (15 . 14)) 5.595 {1/9:15} B:0 3.20004 [ 3.60003] ((1 . 2) (8 . 8) (11 . 10) (12 . 11) (15 . 14)) 4.248 {0/5:10} B:0 3.20013 [ 3.60009] ((4 . 3) (6 . 6) (7 . 7) (8 . 8) (15 . 14)) 5.807 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7449 [and 1/min{score2}: 0.6638] [2863, 1671]: Comparing 1jgt_A and 1g0u_2, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (5 H + 12 S) secondary structure elements in 1g0u_2, of which 17 satisfy the size requirements. 2.31704 [ 2.45480] ((1 . 1) (6 . 5) (7 . 6) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 3.861 {1/9:21} B:0 2.31721 [ 2.45495] ((7 . 6) (8 . 7) (10 . 8) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 5.275 {1/9:21} B:0 2.66677 [ 2.83342] ((1 . 1) (8 . 7) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 4.769 {0/7:15} B:0 3.20006 [ 3.40005] ((7 . 5) (11 . 6) (12 . 9) (18 . 10) (19 . 11)) 4.672 {0/3:10} B:0 3.20134 [ 3.40112] ((4 . 2) (6 . 4) (9 . 7) (10 . 8) (15 . 13)) 10.360 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7485 [and 1/min{score2}: 0.7155] [2863, 1672]: Comparing 1jgt_A and 1g0u_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 22 (9 H + 13 S) secondary structure elements in 1g0u_A, of which 16 satisfy the size requirements. 4.00005 [ 4.00005] ((2 . 12) (4 . 13) (11 . 18) (12 . 21)) 5.316 {0/0:6} B:0 4.00011 [ 4.00011] ((4 . 13) (8 . 16) (11 . 18) (12 . 21)) 6.481 {0/2:6} B:0 4.00011 [ 4.00011] ((2 . 15) (3 . 16) (7 . 18) (9 . 22)) 6.542 {0/4:6} B:0 4.00011 [ 4.00011] ((9 . 9) (10 . 11) (13 . 12) (14 . 13)) 6.618 {0/3:6} B:0 4.00014 [ 4.00014] ((9 . 3) (13 . 7) (14 . 8) (15 . 9)) 6.902 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6077 [and 1/min{score2}: 0.6077] [2863, 1673]: Comparing 1jgt_A and 1g0u_B, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (7 H + 10 S) secondary structure elements in 1g0u_B, of which 16 satisfy the size requirements. 3.25742 [ 3.25742] ((4 . 3) (6 . 4) (7 . 5) (8 . 6) (15 . 12)) 5.570 {1/6:10} B:0 3.46386 [ 3.46386] ((6 . 8) (7 . 9) (9 . 12) (10 . 13) (14 . 16)) 7.109 {1/4:10} B:0 4.00004 [ 4.00004] ((9 . 12) (10 . 13) (13 . 15) (14 . 16)) 5.097 {0/3:6} B:0 4.00004 [ 4.00004] ((6 . 10) (8 . 12) (11 . 15) (12 . 16)) 5.160 {0/4:6} B:0 4.00009 [ 4.00009] ((4 . 9) (8 . 12) (11 . 15) (12 . 16)) 6.203 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.6999 [and 1/min{score2}: 0.6999] [2863, 1674]: Comparing 1jgt_A and 1g0u_C, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1g0u_C, of which 16 satisfy the size requirements. 3.20012 [ 3.20012] ((7 . 11) (8 . 12) (10 . 13) (11 . 14) (12 . 15)) 5.716 {0/3:10} B:0 3.25739 [ 3.25739] ((4 . 3) (9 . 6) (10 . 7) (14 . 9) (15 . 12)) 5.220 {1/6:10} B:0 4.00002 [ 4.00002] ((11 . 4) (12 . 5) (18 . 8) (19 . 9)) 4.253 {0/2:6} B:0 4.00004 [ 4.00004] ((6 . 10) (8 . 12) (11 . 14) (12 . 15)) 5.054 {0/4:6} B:0 4.00005 [ 4.00005] ((9 . 12) (10 . 13) (13 . 14) (14 . 15)) 5.482 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7332 [and 1/min{score2}: 0.7332] [2863, 1675]: Comparing 1jgt_A and 1g0u_D, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (7 H + 10 S) secondary structure elements in 1g0u_D, of which 16 satisfy the size requirements. 4.00004 [ 4.00004] ((6 . 11) (8 . 13) (11 . 15) (12 . 16)) 5.012 {0/4:6} B:0 4.00004 [ 4.00004] ((9 . 13) (10 . 14) (13 . 15) (14 . 16)) 5.198 {0/3:6} B:0 4.00006 [ 4.00006] ((2 . 2) (4 . 3) (10 . 8) (15 . 13)) 5.697 {0/1:6} B:0 4.00015 [ 4.00015] ((9 . 7) (10 . 8) (13 . 9) (14 . 10)) 7.045 {0/2:6} B:0 4.00015 [ 4.00015] ((2 . 12) (3 . 13) (7 . 15) (9 . 17)) 7.076 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7331 [and 1/min{score2}: 0.7331] [2863, 1676]: Comparing 1jgt_A and 1g0u_E, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1g0u_E, of which 16 satisfy the size requirements. 2.66701 [ 2.66701] ((2 . 2) (4 . 3) (11 . 8) (12 . 9) (14 . 11) (15 . 12)) 6.440 {0/0:15} B:0 3.20006 [ 3.20006] ((1 . 2) (11 . 8) (12 . 9) (14 . 11) (15 . 12)) 4.837 {0/0:10} B:0 3.20018 [ 3.20018] ((4 . 3) (7 . 5) (8 . 6) (10 . 7) (15 . 12)) 6.245 {0/2:10} B:0 3.20021 [ 3.20021] ((1 . 2) (9 . 7) (11 . 8) (12 . 9) (15 . 12)) 6.508 {0/1:10} B:0 3.46364 [ 3.46364] ((4 . 3) (6 . 4) (7 . 5) (10 . 7) (15 . 12)) 3.832 {1/4:10} B:0 SIMILARITY (1/min{score1}): 0.6065 [and 1/min{score2}: 0.6065] [2863, 1677]: Comparing 1jgt_A and 1g0u_F, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1g0u_F, of which 16 satisfy the size requirements. 3.20021 [ 3.20021] ((1 . 2) (9 . 7) (11 . 8) (12 . 9) (15 . 12)) 6.550 {0/2:10} B:0 3.25746 [ 3.25746] ((6 . 4) (7 . 5) (8 . 6) (10 . 7) (15 . 12)) 6.085 {1/6:10} B:0 3.88725 [ 3.88725] ((4 . 3) (7 . 5) (8 . 6) (10 . 7) (15 . 12)) 5.954 {1/3:10} B:0 4.00006 [ 4.00006] ((1 . 8) (2 . 10) (4 . 11) (10 . 16)) 5.513 {0/0:6} B:0 4.00006 [ 4.00006] ((6 . 10) (8 . 12) (11 . 14) (12 . 15)) 5.687 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6302 [and 1/min{score2}: 0.6302] [2863, 1678]: Comparing 1jgt_A and 1g0u_G, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 18 (8 H + 10 S) secondary structure elements in 1g0u_G, of which 16 satisfy the size requirements. 3.25747 [ 3.25747] ((6 . 5) (7 . 6) (8 . 7) (10 . 8) (15 . 13)) 6.200 {1/6:10} B:0 3.31577 [ 3.31577] ((4 . 3) (6 . 5) (7 . 6) (8 . 7) (15 . 13)) 5.852 {1/5:10} B:0 4.00006 [ 4.00006] ((6 . 11) (8 . 13) (11 . 16) (12 . 17)) 5.516 {0/4:6} B:0 4.00006 [ 4.00006] ((9 . 13) (10 . 14) (13 . 16) (14 . 17)) 5.583 {0/3:6} B:0 4.00007 [ 4.00007] ((7 . 2) (11 . 6) (18 . 10) (19 . 11)) 5.954 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7673 [and 1/min{score2}: 0.7673] [2863, 1679]: Comparing 1jgt_A and 1g0u_H, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 18 (4 H + 14 S) secondary structure elements in 1g0u_H, of which 17 satisfy the size requirements. 2.30643 [ 2.44590] ((6 . 5) (7 . 6) (10 . 8) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 3.820 {1/10:21} B:0 3.20017 [ 3.40014] ((1 . 1) (9 . 8) (11 . 9) (12 . 10) (15 . 13)) 6.206 {0/4:10} B:0 3.20142 [ 3.40118] ((4 . 2) (6 . 4) (9 . 7) (10 . 8) (15 . 13)) 10.502 {0/8:10} B:0 3.25771 [ 3.44839] ((4 . 3) (7 . 6) (8 . 7) (10 . 8) (15 . 13)) 7.765 {1/6:10} B:0 3.31574 [ 3.49757] ((4 . 2) (7 . 6) (9 . 7) (10 . 8) (15 . 13)) 5.429 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.7603 [and 1/min{score2}: 0.7249] [2863, 1680]: Comparing 1jgt_A and 1g0u_I, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (5 H + 12 S) secondary structure elements in 1g0u_I, of which 15 satisfy the size requirements. 2.00836 [ 1.88513] ((6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (12 . 11) (14 . 13) (15 . 14)) 4.919 {1/14:28} B:0 2.66676 [ 2.50012] ((4 . 3) (6 . 6) (7 . 7) (10 . 9) (14 . 13) (15 . 14)) 4.672 {0/7:15} B:0 2.72008 [ 2.56427] ((1 . 2) (8 . 8) (11 . 10) (12 . 11) (14 . 13) (15 . 14)) 5.009 {1/7:15} B:0 2.76318 [ 2.61541] ((4 . 3) (7 . 7) (9 . 8) (10 . 9) (14 . 13) (15 . 14)) 5.286 {1/6:15} B:0 2.76323 [ 2.61547] ((4 . 3) (7 . 7) (8 . 8) (10 . 9) (14 . 13) (15 . 14)) 5.706 {1/6:15} B:0 SIMILARITY (1/min{score1}): 0.5161 [and 1/min{score2}: 0.5305] [2863, 1681]: Comparing 1jgt_A and 1g0u_J, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 16 (4 H + 12 S) secondary structure elements in 1g0u_J, of which 16 satisfy the size requirements. 3.25743 [ 3.25743] ((4 . 2) (9 . 7) (10 . 8) (14 . 10) (15 . 13)) 5.687 {1/6:10} B:0 4.00002 [ 4.00002] ((11 . 5) (12 . 6) (18 . 9) (19 . 10)) 4.372 {0/1:6} B:0 4.00004 [ 4.00004] ((6 . 11) (8 . 13) (11 . 15) (12 . 16)) 5.228 {0/4:6} B:0 4.00007 [ 4.00007] ((11 . 1) (12 . 2) (14 . 5) (15 . 7)) 5.910 {0/1:6} B:0 4.00013 [ 4.00013] ((1 . 2) (11 . 10) (15 . 14) (18 . 16)) 6.855 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.7674 [and 1/min{score2}: 0.7674] [2863, 1682]: Comparing 1jgt_A and 1g0u_K, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (5 H + 12 S) secondary structure elements in 1g0u_K, of which 17 satisfy the size requirements. 2.33529 [ 2.47019] ((1 . 1) (6 . 5) (7 . 6) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 4.262 {1/8:21} B:0 2.66680 [ 2.83345] ((1 . 1) (8 . 7) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 5.112 {0/5:15} B:0 3.20149 [ 3.40125] ((4 . 2) (6 . 4) (9 . 7) (10 . 8) (15 . 13)) 10.647 {0/7:10} B:0 3.25736 [ 3.44809] ((4 . 2) (6 . 5) (7 . 6) (10 . 8) (15 . 13)) 4.610 {1/6:10} B:0 3.46369 [ 3.62516] ((4 . 2) (7 . 6) (9 . 7) (10 . 8) (15 . 13)) 5.203 {1/4:10} B:0 SIMILARITY (1/min{score1}): 0.6270 [and 1/min{score2}: 0.6126] [2863, 1683]: Comparing 1jgt_A and 1g0u_L, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 16 (4 H + 12 S) secondary structure elements in 1g0u_L, of which 15 satisfy the size requirements. 2.72008 [ 2.56428] ((1 . 1) (8 . 7) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 5.098 {1/7:15} B:0 2.85424 [ 2.78499] ((7 . 6) (8 . 7) (10 . 8) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 5.194 {2/8:21} B:0 3.20121 [ 3.00147] ((11 . 1) (12 . 2) (13 . 4) (14 . 6) (15 . 7)) 10.109 {0/2:10} B:0 3.88722 [ 3.78143] ((4 . 2) (9 . 7) (10 . 8) (14 . 10) (15 . 13)) 5.253 {2/6:10} B:0 4.00010 [ 3.75012] ((4 . 10) (7 . 12) (8 . 13) (10 . 14)) 6.342 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7480 [and 1/min{score2}: 0.7973] [2863, 1709]: Comparing 1jgt_A and 1g3k_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 16 (5 H + 11 S) secondary structure elements in 1g3k_A, of which 15 satisfy the size requirements. 3.20018 [ 3.00021] ((2 . 1) (4 . 2) (9 . 7) (10 . 8) (15 . 14)) 6.240 {0/4:10} B:0 4.00010 [ 3.75012] ((7 . 13) (8 . 14) (10 . 15) (11 . 16)) 6.425 {0/2:6} B:0 4.00012 [ 3.75014] ((9 . 7) (10 . 8) (13 . 10) (14 . 11)) 6.672 {0/3:6} B:0 4.00015 [ 3.75018] ((6 . 12) (7 . 13) (8 . 14) (11 . 16)) 7.078 {0/3:6} B:0 4.00016 [ 3.75019] ((2 . 10) (4 . 11) (8 . 14) (11 . 16)) 7.142 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.7471 [and 1/min{score2}: 0.7960] [2863, 2712]: Comparing 1jgt_A and 1j2q_H, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (5 H + 12 S) secondary structure elements in 1j2q_H, of which 17 satisfy the size requirements. 2.30007 [ 2.44056] ((6 . 5) (7 . 6) (8 . 7) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 4.958 {1/11:21} B:0 2.31703 [ 2.45480] ((1 . 1) (6 . 5) (7 . 6) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 3.728 {1/9:21} B:0 2.66678 [ 2.83343] ((1 . 1) (8 . 7) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 4.858 {0/6:15} B:0 3.20123 [ 3.40103] ((4 . 2) (6 . 4) (9 . 7) (10 . 8) (15 . 13)) 10.148 {0/7:10} B:0 3.25732 [ 3.44806] ((6 . 5) (7 . 6) (10 . 8) (14 . 12) (15 . 13)) 3.365 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.7138 [and 1/min{score2}: 0.6784] [2863, 2863]: Comparing 1jgt_A and 1jgt_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (18 . 18) (19 . 19)) 0.000 {0/70:120} B:0 3.88717 [ 3.88717] ((1 . 1) (3 . 3) (8 . 8) (11 . 12) (15 . 15)) 3.046 {3/9:10} B:0 3.88779 [ 3.88779] ((6 . 2) (7 . 4) (9 . 8) (13 . 11) (14 . 12)) 9.890 {1/3:10} B:0 3.88779 [ 3.88779] ((2 . 6) (4 . 7) (8 . 9) (11 . 13) (12 . 14)) 9.890 {1/3:10} B:0 4.00002 [ 4.00002] ((6 . 11) (7 . 12) (11 . 18) (12 . 19)) 4.476 {0/1:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [2863, 3442]: Comparing 1jgt_A and 1kuu_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 18 (5 H + 13 S) secondary structure elements in 1kuu_A, of which 16 satisfy the size requirements. 2.28586 [ 2.28586] ((1 . 1) (2 . 3) (6 . 6) (7 . 7) (11 . 10) (12 . 11) (14 . 13)) 4.642 {0/0:21} B:0 3.20007 [ 3.20007] ((1 . 1) (7 . 6) (9 . 8) (10 . 9) (14 . 13)) 4.986 {0/3:10} B:0 3.20009 [ 3.20009] ((1 . 1) (7 . 6) (11 . 10) (12 . 11) (14 . 13)) 5.280 {0/0:10} B:0 3.20010 [ 3.20010] ((1 . 6) (6 . 10) (7 . 11) (13 . 17) (14 . 18)) 5.467 {0/1:10} B:0 4.00002 [ 4.00002] ((13 . 1) (14 . 2) (18 . 6) (19 . 7)) 4.195 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6873 [and 1/min{score2}: 0.6873] [2863, 4627]: Comparing 1jgt_A and 1ofd_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 120 (69 H + 51 S) secondary structure elements in 1ofd_A, of which 30 satisfy the size requirements. 3.20013 [ 6.00002] ((8 . 23) (11 . 26) (12 . 27) (13 . 28) (14 . 29)) 5.773 {0/0:10} B:0 3.20098 [ 6.00015] ((2 . 3) (4 . 6) (9 . 10) (13 . 13) (14 . 14)) 9.575 {0/4:10} B:0 3.46441 [ 6.04486] ((2 . 3) (9 . 10) (11 . 11) (13 . 13) (14 . 14)) 9.631 {1/4:10} B:0 4.00002 [ 7.50000] ((2 . 26) (4 . 27) (6 . 28) (7 . 29)) 4.423 {0/1:6} B:0 4.00003 [ 7.50001] ((6 . 1) (11 . 3) (12 . 6) (18 . 11)) 4.904 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.8101 [and 1/min{score2}: 0.4633] [2863, 5053]: Comparing 1jgt_A and 1pma_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (7 H + 10 S) secondary structure elements in 1pma_A, of which 15 satisfy the size requirements. 3.20020 [ 3.00024] ((1 . 2) (9 . 8) (11 . 9) (12 . 10) (15 . 13)) 6.439 {0/4:10} B:0 4.00011 [ 3.75013] ((2 . 12) (3 . 13) (7 . 15) (9 . 17)) 6.486 {0/4:6} B:0 4.00016 [ 3.75019] ((9 . 7) (10 . 8) (13 . 9) (14 . 10)) 7.186 {0/3:6} B:0 4.00027 [ 3.75033] ((7 . 9) (9 . 13) (10 . 14) (13 . 15)) 8.219 {0/3:6} B:0 4.00036 [ 3.75043] ((1 . 3) (4 . 6) (11 . 10) (15 . 14)) 8.797 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6774 [and 1/min{score2}: 0.7196] [2863, 5173]: Comparing 1jgt_A and 1q15_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 41 (22 H + 19 S) secondary structure elements in 1q15_A, of which 19 satisfy the size requirements. 1.35488 [ 1.46842] ((1 . 1) (2 . 3) (4 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (18 . 18) (19 . 19)) 3.207 {6/50:105} B:0 3.20004 [ 3.80002] ((10 . 2) (11 . 3) (12 . 4) (13 . 5) (14 . 6)) 4.342 {0/0:10} B:0 3.23308 [ 3.81991] ((6 . 3) (7 . 4) (9 . 7) (14 . 12) (19 . 17)) 11.186 {1/7:10} B:0 4.00004 [ 4.75002] ((2 . 5) (4 . 6) (11 . 13) (12 . 14)) 4.971 {0/0:6} B:0 4.00007 [ 4.75004] ((14 . 1) (15 . 2) (18 . 4) (19 . 5)) 5.917 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.8116 [and 1/min{score2}: 0.6838] [2863, 5215]: Comparing 1jgt_A and 1q5q_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 17 (7 H + 10 S) secondary structure elements in 1q5q_A, of which 16 satisfy the size requirements. 3.20001 [ 3.20001] ((1 . 2) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 2.906 {0/0:10} B:0 3.20017 [ 3.20017] ((9 . 8) (11 . 9) (12 . 10) (14 . 12) (15 . 13)) 6.139 {0/0:10} B:0 3.20114 [ 3.20114] ((9 . 1) (11 . 2) (12 . 3) (14 . 5) (15 . 6)) 9.940 {0/5:10} B:0 4.00004 [ 4.00004] ((2 . 2) (4 . 3) (11 . 9) (15 . 13)) 4.931 {0/1:6} B:0 4.00004 [ 4.00004] ((9 . 13) (10 . 14) (13 . 15) (14 . 16)) 4.997 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8104 [and 1/min{score2}: 0.8104] [2863, 5216]: Comparing 1jgt_A and 1q5q_H, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 18 (6 H + 12 S) secondary structure elements in 1q5q_H, of which 18 satisfy the size requirements. 2.66673 [ 3.00004] ((1 . 1) (8 . 7) (10 . 8) (11 . 10) (12 . 11) (15 . 14)) 4.209 {0/7:15} B:0 2.66678 [ 3.00008] ((1 . 1) (6 . 5) (7 . 6) (8 . 7) (11 . 10) (15 . 14)) 4.888 {0/9:15} B:0 2.69845 [ 3.02247] ((4 . 2) (6 . 5) (7 . 6) (8 . 7) (10 . 8) (15 . 14)) 5.394 {1/8:15} B:0 2.72005 [ 3.03791] ((1 . 1) (8 . 7) (11 . 10) (12 . 11) (14 . 13) (15 . 14)) 4.683 {1/7:15} B:0 3.25782 [ 3.64101] ((1 . 1) (9 . 9) (11 . 10) (12 . 11) (15 . 14)) 8.228 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.7137 [and 1/min{score2}: 0.6456] [2863, 6344]: Comparing 1jgt_A and 1xff_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 21 (6 H + 15 S) secondary structure elements in 1xff_A, of which 20 satisfy the size requirements. 1.14289 [ 1.37477] ((1 . 1) (2 . 3) (4 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (12 . 13) (13 . 14) (14 . 15) (15 . 16) (18 . 18) (19 . 19)) 3.392 {4/50:105} B:0 2.29584 [ 2.86235] ((1 . 3) (4 . 6) (7 . 8) (8 . 9) (15 . 16) (18 . 18) (19 . 19)) 4.222 {1/12:21} B:0 4.00002 [ 5.00001] ((6 . 12) (7 . 13) (11 . 18) (12 . 19)) 4.447 {0/1:6} B:0 4.00003 [ 5.00002] ((2 . 12) (4 . 13) (6 . 14) (7 . 15)) 4.845 {0/1:6} B:0 4.00004 [ 5.00002] ((4 . 4) (7 . 6) (18 . 14) (19 . 15)) 5.191 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.8750 [and 1/min{score2}: 0.7274] [2863, 6520]: Comparing 1jgt_A and 2pva_A, based on their crossing files. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 16 satisfy the size requirements. There are 29 (7 H + 22 S) secondary structure elements in 2pva_A, of which 23 satisfy the size requirements. 3.20012 [ 4.60004] ((7 . 2) (11 . 8) (12 . 9) (18 . 14) (19 . 15)) 5.690 {0/3:10} B:0 3.20025 [ 4.60008] ((1 . 14) (2 . 16) (9 . 22) (13 . 24) (14 . 25)) 6.810 {0/2:10} B:0 3.20035 [ 4.60012] ((4 . 1) (6 . 2) (11 . 9) (18 . 15) (19 . 16)) 7.428 {0/4:10} B:0 4.00002 [ 5.75001] ((1 . 14) (2 . 16) (9 . 22) (10 . 23)) 4.348 {0/1:6} B:0 4.00006 [ 5.75002] ((6 . 14) (7 . 15) (18 . 24) (19 . 25)) 5.716 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8108 [and 1/min{score2}: 0.5649] -------------------------------------------------------------------------------------------------------------------------