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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6109 1ute_A)  (  208 1aui_A)     0.2670   0.2369   4.7684 (   1    5   15)   0     0.3940   0.3870   22  25
( 6109 1ute_A)  ( 1730 1g5b_A)     0.2724   0.3323   3.4626 (   1   10   15)   0     0.4664   0.4953   22  18
( 6109 1ute_A)  ( 2253 1hp1_A)     0.6835   0.7082   4.7576 (   7   70  120)   0     0.6835   0.7082   22  21
( 6109 1ute_A)  ( 2504 1ii7_A)     0.6750   0.5739   4.4767 (   4   61  105)   0     0.6795   0.5759   22  26
( 6109 1ute_A)  ( 2942 1jk7_A)     0.2727   0.2500   4.9085 (   0    8   15)   0     0.4999   0.4819   22  24
( 6109 1ute_A)  ( 4329 1nnw_A)     0.4167   0.4257   4.3191 (  13   57   91)   0     0.4643   0.4962   22  19
( 6109 1ute_A)  ( 5998 1uf3_A)     0.3636   0.4210   3.3305 (   0   16   28)   0     0.7112   0.8100   22  19
( 6109 1ute_A)  ( 6109 1ute_A)     1.0000   1.0000   0.0000 (   0  184  231)   0     1.0000   1.0000   22  22
( 6109 1ute_A)  ( 6613 4kbp_A)     0.7724   0.9434   3.5997 (   2   87  136)   0     0.8148   0.9909   22  18

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