------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6613 4kbp_A) ( 208 1aui_A) 0.3889 0.2800 2.7403 ( 0 11 21) 0 0.3889 0.3712 18 25 ( 6613 4kbp_A) ( 1730 1g5b_A) 0.2715 0.2715 2.1561 ( 1 5 10) 0 0.4092 0.4092 18 18 ( 6613 4kbp_A) ( 2253 1hp1_A) 0.3867 0.3323 4.1960 ( 1 10 21) 0 0.5677 0.5021 18 21 ( 6613 4kbp_A) ( 2504 1ii7_A) 0.4444 0.3077 3.7249 ( 0 13 28) 0 0.7703 0.5373 18 26 ( 6613 4kbp_A) ( 2942 1jk7_A) 0.2778 0.2083 2.1481 ( 0 7 10) 0 0.4440 0.3776 18 24 ( 6613 4kbp_A) ( 4329 1nnw_A) 0.3333 0.3158 4.9560 ( 0 10 15) 0 0.3333 0.3205 18 19 ( 6613 4kbp_A) ( 5998 1uf3_A) 0.7641 0.7346 4.3307 ( 5 52 105) 0 0.7641 0.7346 18 19 ( 6613 4kbp_A) ( 6109 1ute_A) 0.9434 0.7724 3.5997 ( 2 87 136) 0 0.9909 0.8148 18 22 ( 6613 4kbp_A) ( 6613 4kbp_A) 1.0000 1.0000 0.0000 ( 0 103 153) 0 1.0000 1.0000 18 18 -------------------------------------------------------------------------------------------------------------------------