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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6613 4kbp_A)  (  208 1aui_A)     0.3889   0.2800   2.7403 (   0   11   21)   0     0.3889   0.3712   18  25
( 6613 4kbp_A)  ( 1730 1g5b_A)     0.2715   0.2715   2.1561 (   1    5   10)   0     0.4092   0.4092   18  18
( 6613 4kbp_A)  ( 2253 1hp1_A)     0.3867   0.3323   4.1960 (   1   10   21)   0     0.5677   0.5021   18  21
( 6613 4kbp_A)  ( 2504 1ii7_A)     0.4444   0.3077   3.7249 (   0   13   28)   0     0.7703   0.5373   18  26
( 6613 4kbp_A)  ( 2942 1jk7_A)     0.2778   0.2083   2.1481 (   0    7   10)   0     0.4440   0.3776   18  24
( 6613 4kbp_A)  ( 4329 1nnw_A)     0.3333   0.3158   4.9560 (   0   10   15)   0     0.3333   0.3205   18  19
( 6613 4kbp_A)  ( 5998 1uf3_A)     0.7641   0.7346   4.3307 (   5   52  105)   0     0.7641   0.7346   18  19
( 6613 4kbp_A)  ( 6109 1ute_A)     0.9434   0.7724   3.5997 (   2   87  136)   0     0.9909   0.8148   18  22
( 6613 4kbp_A)  ( 6613 4kbp_A)     1.0000   1.0000   0.0000 (   0  103  153)   0     1.0000   1.0000   18  18

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