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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  320 1b8p_A)  (  320 1b8p_A)     1.0000   1.0000   0.0000 (   0   59   66)   0     1.0000   1.0000   12  12
(  320 1b8p_A)  ( 1322 1ez4_A)     0.5633   0.5773   4.1173 (   5   31   36)   0     0.5633   0.5773   12  11
(  320 1b8p_A)  ( 1965 1gv1_A)     0.5893   0.5893   4.0943 (   6   38   45)   0     0.5893   0.5893   12  12
(  320 1b8p_A)  ( 2329 1hye_A)     0.6306   0.6306   3.7510 (   4   30   36)   0     0.6306   0.6306   12  12
(  320 1b8p_A)  ( 2331 1hyh_A)     0.5833   0.9994   3.5185 (   0   17   21)   0     0.5833   0.9994   12   7
(  320 1b8p_A)  ( 3656 1lld_A)     0.5833   0.9996   3.1047 (   0   17   21)   0     0.5833   0.9996   12   7
(  320 1b8p_A)  ( 4521 1o6z_A)     0.7386   0.8727   3.5953 (   2   30   36)   0     0.7386   0.8727   12  10
(  320 1b8p_A)  ( 4586 1obb_A)     0.7486   0.4735   6.2495 (   0   27   36)   0     0.7486   0.4735   12  19
(  320 1b8p_A)  ( 5878 1t2d_A)     0.7140   0.7651   3.9515 (   3   33   36)   0     0.7140   0.7651   12  11
(  320 1b8p_A)  ( 5943 1u8x_X)     0.7496   0.5624   4.5310 (   0   30   36)   0     0.7496   0.5638   12  16
(  320 1b8p_A)  ( 6421 2cmd  )     0.8328   0.9987   2.9985 (   1   40   45)   0     0.8328   0.9987   12  10
(  320 1b8p_A)  ( 6628 6ldh  )     0.5833   0.9992   3.8259 (   0   17   21)   0     0.5833   0.9992   12   7
(  320 1b8p_A)  ( 6636 7mdh_A)     0.7488   0.9951   2.8666 (   1   27   36)   0     0.7488   0.9951   12   9

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