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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5878 1t2d_A)  (  320 1b8p_A)     0.7651   0.7140   3.9515 (   3   33   36)   0     0.7651   0.7140   11  12
( 5878 1t2d_A)  ( 1322 1ez4_A)     0.9699   0.9699   1.9749 (   3   50   55)   0     0.9699   0.9699   11  11
( 5878 1t2d_A)  ( 1965 1gv1_A)     0.9005   0.8277   1.2415 (   2   41   45)   0     0.9005   0.8277   11  12
( 5878 1t2d_A)  ( 2329 1hye_A)     0.8173   0.7494   2.1511 (   1   32   36)   0     0.8173   0.7494   11  12
( 5878 1t2d_A)  ( 2331 1hyh_A)     0.6078   0.8183   3.4613 (   2   19   21)   0     0.6078   0.8183   11   7
( 5878 1t2d_A)  ( 3656 1lld_A)     0.6018   0.7932   3.3346 (   2   18   21)   0     0.6018   0.8089   11   7
( 5878 1t2d_A)  ( 4521 1o6z_A)     0.7259   0.7977   3.5692 (   1   25   28)   0     0.7259   0.7977   11  10
( 5878 1t2d_A)  ( 4586 1obb_A)     0.3991   0.2583   3.7797 (   2   10   10)   0     0.3991   0.2925   11  19
( 5878 1t2d_A)  ( 5878 1t2d_A)     1.0000   1.0000   0.0000 (   0   53   55)   0     1.0000   1.0000   11  11
( 5878 1t2d_A)  ( 5943 1u8x_X)     0.6078   0.4327   3.7503 (   2   19   21)   0     0.6078   0.4598   11  16
( 5878 1t2d_A)  ( 6421 2cmd  )     0.7077   0.7695   3.1790 (   2   25   28)   0     0.7077   0.7695   11  10
( 5878 1t2d_A)  ( 6628 6ldh  )     0.6077   0.8181   4.1219 (   2   19   21)   0     0.6077   0.8205   11   7
( 5878 1t2d_A)  ( 6636 7mdh_A)     0.3984   0.4158   5.8110 (   3   13   15)   0     0.4263   0.4440   11   9

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