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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6421 2cmd  )  (  320 1b8p_A)     0.9987   0.8328   2.9985 (   1   40   45)   0     0.9987   0.8328   10  12
( 6421 2cmd  )  ( 1322 1ez4_A)     0.6859   0.6486   3.4893 (   3   25   28)   0     0.6859   0.6486   10  11
( 6421 2cmd  )  ( 1965 1gv1_A)     0.6373   0.6118   2.8287 (   6   40   45)   0     0.6373   0.6118   10  12
( 6421 2cmd  )  ( 2329 1hye_A)     0.6945   0.6407   3.5734 (   4   31   36)   0     0.6945   0.6407   10  12
( 6421 2cmd  )  ( 2331 1hyh_A)     0.6999   0.9994   3.5526 (   0   18   21)   0     0.6999   0.9994   10   7
( 6421 2cmd  )  ( 3656 1lld_A)     0.6999   0.9997   3.0628 (   0   18   21)   0     0.6999   0.9997   10   7
( 6421 2cmd  )  ( 4521 1o6z_A)     0.8759   0.8759   3.0560 (   2   31   36)   0     0.8759   0.8759   10  10
( 6421 2cmd  )  ( 4586 1obb_A)     0.8957   0.4735   6.6414 (   0   30   36)   0     0.8957   0.4735   10  19
( 6421 2cmd  )  ( 5878 1t2d_A)     0.7695   0.7077   3.1790 (   2   25   28)   0     0.7695   0.7077   10  11
( 6421 2cmd  )  ( 5943 1u8x_X)     0.8969   0.5622   5.2573 (   1   32   36)   0     0.8969   0.5622   10  16
( 6421 2cmd  )  ( 6421 2cmd  )     1.0000   1.0000   0.0000 (   0   41   45)   0     1.0000   1.0000   10  10
( 6421 2cmd  )  ( 6628 6ldh  )     0.6998   0.9987   4.3167 (   0   18   21)   0     0.6998   0.9987   10   7
( 6421 2cmd  )  ( 6636 7mdh_A)     0.6639   0.6820   4.0453 (   4   29   36)   0     0.6639   0.6820   10   9

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