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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  112 1ae9_A)  (   13 1a0p  )     0.7999   0.7999   2.8886 (   0   22   28)   0     0.7999   0.7999   10  10
(  112 1ae9_A)  (   36 1a41  )     0.8653   0.5951   6.8369 (   2   29   36)   0     0.8653   0.5951   10  15
(  112 1ae9_A)  (  112 1ae9_A)     1.0000   1.0000   0.0000 (   0   39   45)   0     1.0000   1.0000   10  10
(  112 1ae9_A)  (  131 1aih_A)     0.8976   0.8167   2.1837 (   1   28   36)   0     0.8976   0.8167   10  11
(  112 1ae9_A)  ( 1394 1f44_A)     0.7701   0.6874   2.8602 (   3   28   36)   0     0.7701   0.6874   10  12
(  112 1ae9_A)  ( 1553 1flo_A)     0.8964   0.5292   3.6664 (   1   26   36)   0     0.8964   0.5292   10  17
(  112 1ae9_A)  ( 3176 1k4t_A)     0.7429   0.5593   5.8811 (   2   21   28)   0     0.7429   0.5593   10  14

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