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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  131 1aih_A)  (   13 1a0p  )     0.7246   0.7957   3.0770 (   1   21   28)   0     0.7246   0.7957   11  10
(  131 1aih_A)  (   36 1a41  )     0.7898   0.5936   7.0496 (   2   27   36)   0     0.7898   0.5936   11  15
(  131 1aih_A)  (  112 1ae9_A)     0.8167   0.8976   2.1837 (   1   28   36)   0     0.8167   0.8976   11  10
(  131 1aih_A)  (  131 1aih_A)     1.0000   1.0000   0.0000 (   0   46   55)   0     1.0000   1.0000   11  11
(  131 1aih_A)  ( 1394 1f44_A)     0.8929   0.8227   3.5735 (   2   35   45)   0     0.8929   0.8227   11  12
(  131 1aih_A)  ( 1553 1flo_A)     0.7924   0.5263   4.0191 (   2   27   36)   0     0.7924   0.5263   11  17
(  131 1aih_A)  ( 3176 1k4t_A)     0.7234   0.5703   5.5727 (   1   20   28)   0     0.7234   0.5703   11  14

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