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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1821 1ggp_A)  (  762 1d6a_A)     0.9615   0.8171   2.9152 (   5   78  105)   0     0.9615   0.8171   15  18
( 1821 1ggp_A)  ( 1821 1ggp_A)     1.0000   1.0000   0.0000 (   0   84  105)   0     1.0000   1.0000   15  15
( 1821 1ggp_A)  ( 2305 1hwm_A)     0.7276   0.6813   2.2663 (  10   79  105)   0     0.7276   0.6813   15  18
( 1821 1ggp_A)  ( 3658 1lln_A)     0.7903   0.6627   3.4893 (   3   51   66)   0     0.7903   0.6925   15  18
( 1821 1ggp_A)  ( 3689 1lp8_A)     0.9313   0.8224   3.7669 (   2   66   91)   0     0.9313   0.8224   15  17
( 1821 1ggp_A)  ( 3809 1m2t_A)     0.8876   0.6574   2.6895 (   5   68   91)   0     0.8876   0.6574   15  21
( 1821 1ggp_A)  ( 4015 1mrj  )     0.9649   0.7412   2.7760 (   5   80  105)   0     0.9649   0.7412   15  20
( 1821 1ggp_A)  ( 5549 1r4p_A)     0.5601   0.4405   2.4095 (   9   54   66)   0     0.5601   0.4405   15  25
( 1821 1ggp_A)  ( 6079 1uq5_A)     0.9947   0.8312   2.4407 (   3   79  105)   0     0.9947   0.8312   15  18

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