------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4678 1ojq_A) ( 24 1a26 ) 0.2857 0.2000 9.3901 ( 0 4 6) 0 0.4635 0.3429 14 20 ( 4678 1ojq_A) ( 1349 1f0l_A) 0.3570 0.3333 8.4008 ( 0 7 10) 0 0.3570 0.3337 14 15 ( 4678 1ojq_A) ( 1694 1g24_A) 0.8550 0.9953 1.9264 ( 2 54 66) 0 0.8550 0.9953 14 12 ( 4678 1ojq_A) ( 1834 1giq_A) 0.8453 0.8453 3.8503 ( 3 53 66) 0 0.8453 0.8453 14 14 ( 4678 1ojq_A) ( 2002 1gxy_A) 0.5000 0.6999 3.0524 ( 0 15 21) 0 0.5000 0.6999 14 10 ( 4678 1ojq_A) ( 2525 1ikp_A) 0.2857 0.2857 4.5648 ( 0 5 6) 0 0.2972 0.2972 14 14 ( 4678 1ojq_A) ( 2758 1j7n_A) 0.9266 0.6838 3.6422 ( 2 65 78) 0 0.9266 0.6838 14 19 ( 4678 1ojq_A) ( 4678 1ojq_A) 1.0000 1.0000 0.0000 ( 0 79 91) 0 1.0000 1.0000 14 14 ( 4678 1ojq_A) ( 5085 1prt_A) 0.2857 0.2667 6.8257 ( 0 5 6) 0 0.5323 0.5141 14 15 ( 4678 1ojq_A) ( 5439 1qs1_A) 0.7825 0.7825 2.9361 ( 2 44 55) 0 0.7825 0.7825 14 14 ( 4678 1ojq_A) ( 5440 1qs1_A) 0.9268 0.9268 2.9703 ( 2 65 78) 0 0.9268 0.9268 14 14 ( 4678 1ojq_A) ( 5770 1s5d_A) 0.2972 0.2972 4.9604 ( 2 7 10) 0 0.2972 0.2972 14 14 -------------------------------------------------------------------------------------------------------------------------