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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4678 1ojq_A)  (   24 1a26  )     0.2857   0.2000   9.3901 (   0    4    6)   0     0.4635   0.3429   14  20
( 4678 1ojq_A)  ( 1349 1f0l_A)     0.3570   0.3333   8.4008 (   0    7   10)   0     0.3570   0.3337   14  15
( 4678 1ojq_A)  ( 1694 1g24_A)     0.8550   0.9953   1.9264 (   2   54   66)   0     0.8550   0.9953   14  12
( 4678 1ojq_A)  ( 1834 1giq_A)     0.8453   0.8453   3.8503 (   3   53   66)   0     0.8453   0.8453   14  14
( 4678 1ojq_A)  ( 2002 1gxy_A)     0.5000   0.6999   3.0524 (   0   15   21)   0     0.5000   0.6999   14  10
( 4678 1ojq_A)  ( 2525 1ikp_A)     0.2857   0.2857   4.5648 (   0    5    6)   0     0.2972   0.2972   14  14
( 4678 1ojq_A)  ( 2758 1j7n_A)     0.9266   0.6838   3.6422 (   2   65   78)   0     0.9266   0.6838   14  19
( 4678 1ojq_A)  ( 4678 1ojq_A)     1.0000   1.0000   0.0000 (   0   79   91)   0     1.0000   1.0000   14  14
( 4678 1ojq_A)  ( 5085 1prt_A)     0.2857   0.2667   6.8257 (   0    5    6)   0     0.5323   0.5141   14  15
( 4678 1ojq_A)  ( 5439 1qs1_A)     0.7825   0.7825   2.9361 (   2   44   55)   0     0.7825   0.7825   14  14
( 4678 1ojq_A)  ( 5440 1qs1_A)     0.9268   0.9268   2.9703 (   2   65   78)   0     0.9268   0.9268   14  14
( 4678 1ojq_A)  ( 5770 1s5d_A)     0.2972   0.2972   4.9604 (   2    7   10)   0     0.2972   0.2972   14  14

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