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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5770 1s5d_A)  (   24 1a26  )     0.5571   0.3975   3.7218 (   2   20   28)   0     0.6356   0.4488   14  20
( 5770 1s5d_A)  ( 1349 1f0l_A)     0.3157   0.3020   9.9880 (   2    8   10)   0     0.6177   0.5817   14  15
( 5770 1s5d_A)  ( 1694 1g24_A)     0.2857   0.3333   6.8775 (   0    4    6)   0     0.4824   0.5478   14  12
( 5770 1s5d_A)  ( 1834 1giq_A)     0.3571   0.3571   5.2698 (   0    7   10)   0     0.3571   0.3571   14  14
( 5770 1s5d_A)  ( 2002 1gxy_A)     0.2696   0.3363   7.8987 (   1    4    6)   0     0.2696   0.3363   14  10
( 5770 1s5d_A)  ( 2525 1ikp_A)     0.2857   0.2857   5.7704 (   0    5    6)   0     0.4817   0.4817   14  14
( 5770 1s5d_A)  ( 2758 1j7n_A)     0.3158   0.2521   7.2979 (   2    8   10)   0     0.4260   0.3152   14  19
( 5770 1s5d_A)  ( 4678 1ojq_A)     0.2972   0.2972   4.9604 (   2    7   10)   0     0.2972   0.2972   14  14
( 5770 1s5d_A)  ( 5085 1prt_A)     0.6885   0.6480   3.9432 (   3   34   45)   0     0.6885   0.6480   14  15
( 5770 1s5d_A)  ( 5439 1qs1_A)     0.2696   0.2696   8.6112 (   1    4    6)   0     0.4080   0.4080   14  14
( 5770 1s5d_A)  ( 5440 1qs1_A)     0.4261   0.4261   5.6736 (   1   11   15)   0     0.4859   0.4859   14  14
( 5770 1s5d_A)  ( 5770 1s5d_A)     1.0000   1.0000   0.0000 (   0   81   91)   0     1.0000   1.0000   14  14

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