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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  595 1chu_A)  (  595 1chu_A)     1.0000   1.0000   0.0000 (   0   23   28)   0     1.0000   1.0000    8   8
(  595 1chu_A)  ( 2995 1jnr_A)     0.8740   0.7772   4.8110 (   0   18   21)   0     0.8740   0.7772    8   9
(  595 1chu_A)  ( 5263 1q9i_A)     0.9996   0.7999   3.2615 (   0   23   28)   0     0.9996   0.7999    8  10
(  595 1chu_A)  ( 5371 1qla_A)     0.7001   0.7693   3.6427 (   1   10   15)   0     0.7001   0.7693    8   7

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