------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1196 1ekm_A) ( 574 1cew_I) 0.5769 0.6309 6.6881 ( 1 8 10) 0 0.5769 0.6309 8 7 ( 1196 1ekm_A) ( 1121 1eej_A) 0.6250 0.8332 2.8511 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 1196 1ekm_A) ( 1195 1ekm_A) 0.6250 0.8332 3.1392 ( 0 7 10) 0 0.6250 0.8332 8 6 ( 1196 1ekm_A) ( 1196 1ekm_A) 1.0000 1.0000 0.0000 ( 0 24 28) 0 1.0000 1.0000 8 8 ( 1196 1ekm_A) ( 1248 1eqk_A) 0.6249 0.7140 4.4507 ( 0 8 10) 0 0.6249 0.7140 8 7 ( 1196 1ekm_A) ( 2003 1gy7_A) 0.7488 0.5452 6.0059 ( 0 10 15) 0 0.7488 0.5452 8 11 ( 1196 1ekm_A) ( 2228 1hkx_A) 0.5915 0.4881 8.7697 ( 1 9 10) 0 0.5915 0.4881 8 10 ( 1196 1ekm_A) ( 2464 1idp_A) 0.4993 0.3635 8.6563 ( 0 4 6) 0 0.4994 0.3635 8 11 ( 1196 1ekm_A) ( 2563 1iq8_A) 0.6249 0.4167 4.0559 ( 0 9 10) 0 0.6249 0.4638 8 12 ( 1196 1ekm_A) ( 2630 1ivw_A) 0.7500 0.8571 2.2720 ( 0 12 15) 0 0.7500 0.8571 8 7 ( 1196 1ekm_A) ( 2944 1jkg_A) 0.7474 0.5449 7.3463 ( 0 10 15) 0 0.7474 0.5449 8 11 ( 1196 1ekm_A) ( 2945 1jkg_B) 0.4198 0.2974 10.5230 ( 1 5 6) 0 0.5772 0.3796 8 13 ( 1196 1ekm_A) ( 3418 1ksi_A) 0.6250 0.8331 3.3262 ( 0 7 10) 0 0.6250 0.8331 8 6 ( 1196 1ekm_A) ( 3419 1ksi_A) 0.7498 0.9993 3.6542 ( 0 12 15) 0 0.7498 0.9993 8 6 ( 1196 1ekm_A) ( 3888 1m98_A) 0.7493 0.5998 5.3118 ( 0 7 15) 0 0.7493 0.5998 8 10 ( 1196 1ekm_A) ( 3994 1mol_A) 0.6244 0.7132 6.2669 ( 0 8 10) 0 0.6244 0.7132 8 7 ( 1196 1ekm_A) ( 4174 1n9e_A) 0.6249 0.7142 3.5473 ( 0 8 10) 0 0.6249 0.7142 8 7 ( 1196 1ekm_A) ( 4175 1n9e_A) 0.7000 0.7000 4.0068 ( 1 10 15) 0 0.7000 0.7000 8 8 ( 1196 1ekm_A) ( 4328 1nnv_A) 0.7497 0.9985 4.4355 ( 0 11 15) 0 0.7497 0.9985 8 6 ( 1196 1ekm_A) ( 4419 1nww_A) 0.5930 0.4887 4.9740 ( 1 9 10) 0 0.5930 0.5233 8 10 ( 1196 1ekm_A) ( 4543 1o7n_B) 0.4997 0.3333 6.8252 ( 0 4 6) 0 0.4997 0.3671 8 12 ( 1196 1ekm_A) ( 4575 1oac_A) 0.6249 0.8331 3.5800 ( 0 7 10) 0 0.6249 0.8331 8 6 ( 1196 1ekm_A) ( 4576 1oac_A) 0.7500 0.9998 2.5988 ( 0 12 15) 0 0.7500 0.9998 8 6 ( 1196 1ekm_A) ( 4596 1ocv_A) 0.7138 0.5374 4.9859 ( 1 11 15) 0 0.7138 0.5374 8 11 ( 1196 1ekm_A) ( 4621 1of5_B) 0.7490 0.5453 5.7340 ( 0 10 15) 0 0.7490 0.5453 8 11 ( 1196 1ekm_A) ( 4652 1oh0_A) 0.7133 0.7133 5.9784 ( 1 11 15) 0 0.7133 0.7133 8 8 ( 1196 1ekm_A) ( 5199 1q40_A) 0.4201 0.4201 9.1014 ( 1 5 6) 0 0.4999 0.4999 8 8 ( 1196 1ekm_A) ( 5200 1q40_B) 0.4524 0.3821 9.9976 ( 1 6 6) 0 0.4524 0.3821 8 10 ( 1196 1ekm_A) ( 5230 1q7h_A) 0.1497 0.1499 7.0039 ( 4 6 6) 0 0.1497 0.1499 8 6 ( 1196 1ekm_A) ( 5769 1s5a_A) 0.6246 0.4545 5.8987 ( 0 7 10) 0 0.6246 0.4545 8 11 ( 1196 1ekm_A) ( 5821 1sjw_A) 0.7493 0.5998 5.3068 ( 0 10 15) 0 0.7493 0.5998 8 10 ( 1196 1ekm_A) ( 5851 1stf_I) 0.6249 0.8330 3.9357 ( 0 7 10) 0 0.6249 0.8330 8 6 ( 1196 1ekm_A) ( 6014 1ugi_A) 0.6246 0.7136 5.6741 ( 0 8 10) 0 0.6246 0.7136 8 7 ( 1196 1ekm_A) ( 6319 1vqq_A) 0.6245 0.6245 6.0256 ( 0 6 10) 0 0.6245 0.6245 8 8 -------------------------------------------------------------------------------------------------------------------------