------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [4419, 574]: Comparing 1nww_A and 1cew_I, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1cew_I, of which 7 satisfy the size requirements. 1.69219 [ 1.23632] ((1 . 2) (6 . 3) (7 . 4) (8 . 5) (9 . 7) (10 . 8)) 3.075 {1/12:15} B:0 2.00001 [ 1.40002] ((6 . 3) (7 . 4) (8 . 5) (9 . 7) (10 . 8)) 1.824 {0/8:10} B:0 2.72437 [ 2.24507] ((5 . 2) (6 . 3) (7 . 4) (8 . 5)) 6.445 {1/5:6} B:0 2.72625 [ 2.24843] ((3 . 5) (5 . 6) (6 . 7) (8 . 8)) 10.402 {1/5:6} B:0 2.97500 [ 2.64101] ((5 . 2) (8 . 3) (9 . 5) (11 . 6)) 10.811 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.5910 [and 1/min{score2}: 0.8089] [4419, 1121]: Comparing 1nww_A and 1eej_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 20 (9 H + 11 S) secondary structure elements in 1eej_A, of which 6 satisfy the size requirements. 6.04475 [ 6.00589] ((2 . 1) (3 . 2) (6 . 5) (7 . 6)) 6.765 {3/5:6} B:0 6.69946 [ 6.67101] ((3 . 2) (6 . 5) (9 . 4) (10 . 3)) 8.871 {2/3:6} B:2 SIMILARITY (1/min{score1}): 0.1654 [and 1/min{score2}: 0.1665] [4419, 1195]: Comparing 1nww_A and 1ekm_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 55 (19 H + 36 S) secondary structure elements in 1ekm_A, of which 6 satisfy the size requirements. 2.50017 [ 1.50078] ((6 . 2) (8 . 4) (9 . 5) (10 . 6)) 5.133 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6663] [4419, 1196]: Comparing 1nww_A and 1ekm_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 55 (19 H + 36 S) secondary structure elements in 1ekm_A, of which 8 satisfy the size requirements. 1.91093 [ 1.72131] ((1 . 8) (5 . 9) (6 . 11) (8 . 12) (9 . 14) (10 . 15)) 5.721 {2/13:15} B:0 2.04629 [ 1.68635] ((5 . 9) (6 . 11) (8 . 12) (9 . 14) (10 . 15)) 4.974 {1/9:10} B:0 2.04640 [ 1.68655] ((5 . 10) (6 . 11) (8 . 12) (9 . 14) (10 . 15)) 5.412 {1/9:10} B:0 3.57097 [ 3.43700] ((2 . 8) (5 . 10) (8 . 14) (9 . 15)) 8.764 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.5233 [and 1/min{score2}: 0.5930] [4419, 1248]: Comparing 1nww_A and 1eqk_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 7 (1 H + 6 S) secondary structure elements in 1eqk_A, of which 7 satisfy the size requirements. 2.00005 [ 1.40015] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7)) 3.228 {0/7:10} B:0 2.50144 [ 1.75420] ((3 . 3) (6 . 5) (8 . 6) (9 . 7)) 8.772 {0/4:6} B:0 2.61608 [ 2.03515] ((6 . 1) (8 . 3) (9 . 5) (10 . 6)) 7.911 {1/6:6} B:0 10.00976 [10.00236] ((6 . 4) (7 . 5) (8 . 6) (9 . 7)) 7.705 {3/3:6} B:0 2.81798 [ 2.75006] ((3 . 7) (6 . 1) (7 . 3) (8 . 4) (9 . 5) (10 . 6)) 6.002 {3/11:15} B:1 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.7142] [4419, 2003]: Comparing 1nww_A and 1gy7_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 12 (3 H + 9 S) secondary structure elements in 1gy7_A, of which 11 satisfy the size requirements. 1.12534 [ 1.23298] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 12)) 3.694 {1/19:36} B:0 1.21943 [ 1.30705] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 4.023 {2/22:36} B:0 1.25050 [ 1.37538] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 4.002 {0/18:28} B:0 1.27463 [ 1.39368] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10)) 2.590 {1/15:28} B:0 2.50069 [ 2.75052] ((2 . 6) (3 . 7) (6 . 9) (8 . 10)) 7.296 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8886 [and 1/min{score2}: 0.8110] [4419, 2228]: Comparing 1nww_A and 1hkx_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1hkx_A, of which 10 satisfy the size requirements. 1.49418 [ 1.49418] ((1 . 1) (2 . 2) (3 . 4) (5 . 7) (6 . 9) (7 . 10) (8 . 11) (9 . 12) (10 . 13)) 3.565 {3/22:36} B:0 2.97333 [ 2.97333] ((1 . 1) (2 . 2) (3 . 4) (10 . 12)) 6.812 {1/4:6} B:0 2.97409 [ 2.97409] ((5 . 5) (8 . 9) (9 . 11) (10 . 12)) 9.282 {1/4:6} B:0 5.07679 [ 5.07679] ((5 . 2) (6 . 4) (8 . 9) (10 . 11)) 11.040 {2/4:6} B:0 1.78565 [ 1.78565] ((2 . 7) (3 . 9) (5 . 2) (6 . 13) (8 . 12) (9 . 11)) 4.969 {1/8:15} B:3 SIMILARITY (1/min{score1}): 0.6693 [and 1/min{score2}: 0.6693] [4419, 2464]: Comparing 1nww_A and 1idp_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1idp_A, of which 11 satisfy the size requirements. 1.74371 [ 1.89243] ((1 . 1) (2 . 2) (5 . 6) (6 . 7) (7 . 8) (8 . 9)) 4.155 {1/9:15} B:0 2.00313 [ 2.20236] ((1 . 1) (2 . 2) (3 . 3) (5 . 6) (10 . 10)) 9.009 {0/6:10} B:0 2.50131 [ 2.75098] ((1 . 2) (8 . 9) (9 . 10) (10 . 12)) 8.555 {0/3:6} B:0 2.50323 [ 2.75243] ((3 . 8) (6 . 9) (8 . 11) (9 . 12)) 10.731 {0/3:6} B:0 2.50391 [ 2.75294] ((3 . 7) (6 . 9) (8 . 10) (9 . 12)) 11.257 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5735 [and 1/min{score2}: 0.5284] [4419, 2563]: Comparing 1nww_A and 1iq8_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 52 (27 H + 25 S) secondary structure elements in 1iq8_A, of which 12 satisfy the size requirements. 2.50206 [ 3.00120] ((2 . 32) (3 . 33) (5 . 35) (9 . 39)) 9.592 {0/3:6} B:0 2.97338 [ 3.31045] ((7 . 39) (8 . 40) (9 . 41) (10 . 42)) 7.074 {1/4:6} B:0 1.98331 [ 2.20773] ((2 . 32) (5 . 35) (6 . 42) (8 . 41) (9 . 40) (10 . 39)) 7.173 {2/12:15} B:3 SIMILARITY (1/min{score1}): 0.5042 [and 1/min{score2}: 0.4530] [4419, 2630]: Comparing 1nww_A and 1ivw_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 51 (14 H + 37 S) secondary structure elements in 1ivw_A, of which 7 satisfy the size requirements. 1.70300 [ 1.26340] ((1 . 7) (5 . 8) (6 . 10) (8 . 12) (9 . 14) (10 . 15)) 5.315 {1/11:15} B:0 2.00028 [ 1.40081] ((5 . 8) (6 . 10) (8 . 12) (9 . 14) (10 . 15)) 4.908 {0/7:10} B:0 2.97392 [ 2.63947] ((2 . 7) (5 . 8) (9 . 12) (10 . 14)) 8.885 {1/4:6} B:0 3.82379 [ 3.76823] ((2 . 7) (5 . 8) (6 . 10) (9 . 14) (10 . 15)) 6.712 {3/8:10} B:0 2.20983 [ 1.84901] ((3 . 15) (5 . 8) (8 . 10) (9 . 12) (10 . 14)) 9.623 {1/6:10} B:1 SIMILARITY (1/min{score1}): 0.5872 [and 1/min{score2}: 0.7915] [4419, 2944]: Comparing 1nww_A and 1jkg_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 12 (3 H + 9 S) secondary structure elements in 1jkg_A, of which 11 satisfy the size requirements. 1.12300 [ 1.23120] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 12)) 3.975 {1/20:36} B:0 1.20392 [ 1.29451] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 4.237 {2/23:36} B:0 1.25062 [ 1.37547] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 4.223 {0/19:28} B:0 1.26927 [ 1.38958] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10)) 3.147 {1/16:28} B:0 2.37852 [ 2.50588] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (9 . 9)) 4.371 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.8905 [and 1/min{score2}: 0.8122] [4419, 2945]: Comparing 1nww_A and 1jkg_B, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 16 (7 H + 9 S) secondary structure elements in 1jkg_B, of which 13 satisfy the size requirements. 1.12149 [ 1.44921] ((1 . 1) (2 . 2) (3 . 4) (5 . 8) (6 . 9) (7 . 11) (8 . 12) (9 . 13) (10 . 15)) 4.515 {1/21:36} B:0 1.19067 [ 1.48315] ((1 . 1) (2 . 2) (3 . 4) (5 . 8) (6 . 9) (7 . 11) (8 . 12) (9 . 13) (10 . 14)) 3.871 {2/24:36} B:0 2.00116 [ 2.60053] ((1 . 1) (2 . 2) (3 . 4) (9 . 11) (10 . 12)) 7.022 {0/4:10} B:0 2.50019 [ 3.25008] ((2 . 8) (3 . 9) (8 . 13) (9 . 15)) 5.258 {0/2:6} B:0 2.50045 [ 3.25020] ((2 . 8) (3 . 9) (6 . 12) (8 . 13)) 6.542 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8917 [and 1/min{score2}: 0.6900] [4419, 3418]: Comparing 1nww_A and 1ksi_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 51 (14 H + 37 S) secondary structure elements in 1ksi_A, of which 6 satisfy the size requirements. 2.50011 [ 1.50050] ((6 . 2) (8 . 5) (9 . 6) (10 . 7)) 4.583 {0/3:6} B:0 2.50062 [ 1.50285] ((2 . 1) (3 . 2) (8 . 6) (9 . 7)) 7.092 {0/3:6} B:0 2.50137 [ 1.50632] ((3 . 2) (6 . 5) (8 . 6) (9 . 7)) 8.661 {0/2:6} B:0 5.07650 [ 5.01024] ((2 . 1) (6 . 2) (8 . 5) (9 . 7)) 8.300 {2/4:6} B:0 6.25793 [ 6.25107] ((2 . 1) (3 . 2) (8 . 7) (9 . 6) (10 . 5) (11 . 3)) 7.334 {5/8:15} B:3 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6664] [4419, 3419]: Comparing 1nww_A and 1ksi_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 51 (14 H + 37 S) secondary structure elements in 1ksi_A, of which 6 satisfy the size requirements. 2.07833 [ 1.85895] ((1 . 8) (5 . 10) (6 . 12) (8 . 13) (9 . 16) (10 . 17)) 5.462 {2/11:15} B:0 2.11933 [ 1.58099] ((5 . 10) (6 . 12) (8 . 13) (9 . 16) (10 . 17)) 4.953 {1/7:10} B:0 3.82386 [ 3.76001] ((2 . 8) (5 . 10) (6 . 12) (9 . 16) (10 . 17)) 7.415 {3/8:10} B:0 5.07667 [ 5.01042] ((1 . 8) (2 . 10) (3 . 12) (7 . 16)) 10.192 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.4812 [and 1/min{score2}: 0.6325] [4419, 3888]: Comparing 1nww_A and 1m98_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 23 (16 H + 7 S) secondary structure elements in 1m98_A, of which 10 satisfy the size requirements. 1.28281 [ 1.28281] ((1 . 11) (2 . 12) (3 . 14) (5 . 16) (7 . 17) (8 . 19) (9 . 21) (10 . 22)) 4.509 {1/14:28} B:0 3.57060 [ 3.57060] ((5 . 12) (9 . 17) (10 . 19) (11 . 20)) 6.183 {1/3:6} B:0 6.69940 [ 6.69940] ((5 . 11) (9 . 17) (10 . 19) (11 . 20)) 6.053 {2/3:6} B:0 1.78755 [ 1.78755] ((2 . 16) (5 . 20) (6 . 17) (8 . 19) (9 . 21) (10 . 22)) 7.669 {1/8:15} B:1 2.38039 [ 2.38039] ((1 . 16) (5 . 20) (6 . 19) (8 . 21) (9 . 22)) 9.134 {1/5:10} B:1 SIMILARITY (1/min{score1}): 0.7795 [and 1/min{score2}: 0.7795] [4419, 3994]: Comparing 1nww_A and 1mol_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 7 (1 H + 6 S) secondary structure elements in 1mol_A, of which 7 satisfy the size requirements. 2.00030 [ 1.40088] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7)) 5.022 {0/6:10} B:0 2.00968 [ 1.42759] ((3 . 1) (6 . 4) (8 . 5) (9 . 6) (10 . 7)) 11.957 {0/4:10} B:0 2.50085 [ 1.75246] ((5 . 2) (8 . 4) (9 . 5) (10 . 6)) 7.672 {0/2:6} B:0 2.50118 [ 1.75344] ((6 . 4) (8 . 5) (9 . 6) (10 . 7)) 8.346 {0/2:6} B:0 2.50217 [ 1.75631] ((3 . 3) (7 . 5) (8 . 6) (9 . 7)) 9.716 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.7138] [4419, 4174]: Comparing 1nww_A and 1n9e_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 61 (19 H + 42 S) secondary structure elements in 1n9e_A, of which 7 satisfy the size requirements. 2.50010 [ 1.75029] ((6 . 4) (8 . 6) (9 . 7) (10 . 8)) 4.509 {0/4:6} B:0 2.50136 [ 1.75397] ((3 . 4) (6 . 6) (8 . 7) (9 . 9)) 8.647 {0/1:6} B:0 3.01526 [ 2.89768] ((2 . 2) (6 . 4) (8 . 6) (9 . 7) (10 . 8)) 6.121 {2/7:10} B:0 3.01543 [ 2.89788] ((5 . 2) (6 . 4) (8 . 6) (9 . 7) (10 . 8)) 7.187 {2/7:10} B:0 5.07679 [ 5.01910] ((2 . 5) (3 . 6) (6 . 7) (8 . 9)) 11.055 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.5733 [and 1/min{score2}: 0.7369] [4419, 4175]: Comparing 1nww_A and 1n9e_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 61 (19 H + 42 S) secondary structure elements in 1n9e_A, of which 8 satisfy the size requirements. 2.00510 [ 1.60991] ((3 . 14) (7 . 16) (8 . 18) (9 . 20) (10 . 21)) 10.180 {0/3:10} B:0 2.00632 [ 1.61225] ((3 . 14) (6 . 16) (8 . 18) (9 . 20) (10 . 21)) 10.741 {0/4:10} B:0 2.20829 [ 1.94578] ((5 . 12) (6 . 14) (9 . 18) (10 . 20) (11 . 22)) 8.069 {1/6:10} B:0 2.37909 [ 2.18011] ((6 . 14) (8 . 16) (9 . 18) (10 . 20) (11 . 22)) 6.982 {1/5:10} B:0 5.07644 [ 5.03178] ((1 . 12) (6 . 18) (8 . 20) (9 . 21)) 7.170 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.4987 [and 1/min{score2}: 0.6212] [4419, 4328]: Comparing 1nww_A and 1nnv_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 6 (2 H + 4 S) secondary structure elements in 1nnv_A, of which 6 satisfy the size requirements. 2.50017 [ 1.50078] ((6 . 3) (8 . 4) (9 . 5) (10 . 6)) 5.122 {0/3:6} B:0 2.50132 [ 1.50609] ((3 . 3) (6 . 4) (8 . 5) (9 . 6)) 8.581 {0/2:6} B:0 5.07654 [ 5.01028] ((2 . 1) (5 . 2) (9 . 4) (10 . 5)) 8.844 {2/4:6} B:0 5.07641 [ 5.01015] ((3 . 3) (8 . 6) (9 . 5) (10 . 4)) 6.423 {1/2:6} B:2 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6663] [4419, 4419]: Comparing 1nww_A and 1nww_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11)) 0.000 {0/34:45} B:0 2.00007 [ 2.00007] ((3 . 3) (5 . 5) (7 . 7) (8 . 9) (11 . 11)) 3.477 {0/5:10} B:0 2.07596 [ 2.07596] ((2 . 5) (3 . 6) (6 . 8) (8 . 9) (9 . 10)) 9.634 {1/8:10} B:0 2.07596 [ 2.07596] ((5 . 2) (6 . 3) (8 . 6) (9 . 8) (10 . 9)) 9.634 {1/8:10} B:0 2.50006 [ 2.50006] ((5 . 5) (7 . 7) (9 . 8) (11 . 11)) 3.943 {0/2:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [4419, 4543]: Comparing 1nww_A and 1o7n_B, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 14 (5 H + 9 S) secondary structure elements in 1o7n_B, of which 12 satisfy the size requirements. 2.00075 [ 2.40044] ((1 . 2) (2 . 3) (3 . 5) (9 . 9) (10 . 10)) 6.302 {0/3:10} B:0 2.00181 [ 2.40105] ((5 . 7) (6 . 9) (8 . 10) (9 . 11) (10 . 13)) 7.847 {0/4:10} B:0 2.50027 [ 3.00016] ((7 . 9) (8 . 10) (9 . 11) (10 . 14)) 5.773 {0/3:6} B:0 2.50034 [ 3.00019] ((5 . 7) (7 . 9) (8 . 10) (9 . 11)) 6.089 {0/0:6} B:0 2.97355 [ 3.31057] ((5 . 3) (6 . 5) (8 . 6) (10 . 9)) 7.800 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.4166] [4419, 4575]: Comparing 1nww_A and 1oac_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 63 (15 H + 48 S) secondary structure elements in 1oac_A, of which 6 satisfy the size requirements. 2.50019 [ 1.50086] ((6 . 13) (8 . 15) (9 . 16) (10 . 17)) 5.256 {0/3:6} B:0 2.50063 [ 1.50291] ((2 . 12) (3 . 13) (8 . 16) (9 . 17)) 7.127 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.6663] [4419, 4576]: Comparing 1nww_A and 1oac_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 63 (15 H + 48 S) secondary structure elements in 1oac_A, of which 6 satisfy the size requirements. 2.07830 [ 1.85890] ((1 . 18) (5 . 19) (6 . 21) (8 . 22) (9 . 24) (10 . 25)) 5.328 {2/11:15} B:0 2.11929 [ 1.58091] ((5 . 19) (6 . 21) (8 . 22) (9 . 24) (10 . 25)) 4.759 {1/7:10} B:0 2.97413 [ 2.57904] ((2 . 18) (5 . 19) (9 . 22) (10 . 24)) 9.359 {1/4:6} B:0 3.57161 [ 3.36835] ((1 . 19) (3 . 22) (6 . 24) (7 . 25)) 10.790 {1/3:6} B:0 4.33576 [ 4.29240] ((2 . 18) (5 . 19) (6 . 21) (9 . 24) (10 . 25)) 6.919 {3/7:10} B:0 SIMILARITY (1/min{score1}): 0.4812 [and 1/min{score2}: 0.6325] [4419, 4596]: Comparing 1nww_A and 1ocv_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 14 (4 H + 10 S) secondary structure elements in 1ocv_A, of which 11 satisfy the size requirements. 1.17032 [ 1.26778] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 11) (10 . 12)) 3.227 {2/26:36} B:0 1.66833 [ 1.83458] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (8 . 9) (9 . 10)) 6.707 {0/7:15} B:0 2.00222 [ 2.20167] ((5 . 2) (6 . 4) (8 . 7) (9 . 9) (10 . 10)) 8.264 {0/7:10} B:0 2.12288 [ 2.29487] ((2 . 6) (3 . 7) (6 . 9) (8 . 11) (9 . 12)) 9.867 {1/7:10} B:0 2.21032 [ 2.36519] ((2 . 6) (3 . 7) (6 . 9) (8 . 11) (9 . 14)) 9.997 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.8545 [and 1/min{score2}: 0.7888] [4419, 4621]: Comparing 1nww_A and 1of5_B, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1of5_B, of which 11 satisfy the size requirements. 1.26084 [ 1.34108] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 11)) 3.763 {2/20:36} B:0 2.20307 [ 2.22910] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (7 . 6) (8 . 8) (9 . 9) (10 . 11)) 6.674 {3/14:28} B:0 2.21835 [ 2.37174] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (11 . 10)) 13.461 {1/6:10} B:0 2.97309 [ 3.13230] ((1 . 1) (2 . 2) (5 . 5) (10 . 9)) 4.678 {1/4:6} B:0 5.07641 [ 5.11071] ((3 . 4) (7 . 8) (8 . 9) (10 . 11)) 6.474 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.7931 [and 1/min{score2}: 0.7457] [4419, 4652]: Comparing 1nww_A and 1oh0_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 13 (4 H + 9 S) secondary structure elements in 1oh0_A, of which 8 satisfy the size requirements. 1.25801 [ 1.01544] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (8 . 9) (9 . 10) (10 . 11)) 2.619 {1/20:28} B:0 1.44525 [ 1.17466] ((1 . 1) (2 . 2) (5 . 6) (6 . 7) (8 . 9) (9 . 10) (10 . 11)) 2.340 {1/15:21} B:0 2.00295 [ 1.60574] ((5 . 2) (6 . 4) (8 . 7) (9 . 9) (10 . 10)) 8.871 {0/8:10} B:0 2.11964 [ 1.81028] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (10 . 10)) 6.080 {1/7:10} B:0 2.97439 [ 2.72583] ((1 . 2) (2 . 6) (3 . 7) (6 . 9)) 9.864 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7949 [and 1/min{score2}: 0.9848] [4419, 5199]: Comparing 1nww_A and 1q40_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1q40_A, of which 8 satisfy the size requirements. 1.26805 [ 1.03422] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 7) (8 . 8) (9 . 9) (10 . 10)) 6.321 {1/17:28} B:0 1.27061 [ 1.03893] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 5.348 {1/16:28} B:0 1.46975 [ 1.21889] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (8 . 8) (9 . 9) (10 . 10)) 5.948 {1/12:21} B:0 2.50087 [ 2.00170] ((1 . 6) (3 . 7) (8 . 9) (9 . 10)) 7.731 {0/2:6} B:0 2.97318 [ 2.72425] ((1 . 1) (3 . 4) (5 . 6) (8 . 7)) 5.759 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7886 [and 1/min{score2}: 0.9669] [4419, 5200]: Comparing 1nww_A and 1q40_B, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1q40_B, of which 10 satisfy the size requirements. 1.19055 [ 1.19055] ((1 . 1) (2 . 2) (3 . 3) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 3.637 {2/24:36} B:0 2.50024 [ 2.50024] ((1 . 1) (2 . 2) (3 . 3) (9 . 9)) 5.584 {0/3:6} B:0 3.57067 [ 3.57067] ((1 . 1) (2 . 2) (3 . 3) (10 . 9)) 6.901 {1/3:6} B:0 3.57079 [ 3.57079] ((3 . 9) (6 . 10) (8 . 11) (9 . 12)) 7.822 {1/3:6} B:0 5.07644 [ 5.07644] ((1 . 1) (2 . 2) (3 . 3) (9 . 7)) 7.241 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.8399 [and 1/min{score2}: 0.8399] [4419, 5230]: Comparing 1nww_A and 1q7h_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 17 (6 H + 11 S) secondary structure elements in 1q7h_A, of which 6 satisfy the size requirements. 5.07671 [ 5.01046] ((8 . 3) (9 . 4) (10 . 5) (11 . 7)) 10.467 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.1970 [and 1/min{score2}: 0.1996] [4419, 5769]: Comparing 1nww_A and 1s5a_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1s5a_A, of which 11 satisfy the size requirements. 1.04639 [ 1.13559] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13)) 3.071 {2/30:45} B:0 2.50130 [ 2.75098] ((2 . 6) (3 . 8) (6 . 10) (8 . 11)) 8.550 {0/4:6} B:0 7.52329 [ 7.53391] ((8 . 4) (9 . 5) (10 . 8) (11 . 6)) 12.904 {3/4:6} B:1 5.50245 [ 5.50351] ((1 . 13) (2 . 6) (5 . 2) (6 . 12) (7 . 10) (8 . 11) (9 . 9) (10 . 8) (11 . 1)) 9.124 {11/20:36} B:6 SIMILARITY (1/min{score1}): 0.9557 [and 1/min{score2}: 0.8806] [4419, 5821]: Comparing 1nww_A and 1sjw_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1sjw_A, of which 10 satisfy the size requirements. 1.23781 [ 1.23781] ((1 . 1) (2 . 2) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 2.618 {2/21:36} B:0 2.20935 [ 2.20935] ((2 . 6) (3 . 7) (6 . 9) (8 . 10) (9 . 11)) 9.222 {1/6:10} B:0 5.07682 [ 5.07682] ((2 . 1) (5 . 5) (7 . 7) (10 . 10)) 11.205 {2/4:6} B:0 3.34376 [ 3.34376] ((1 . 1) (2 . 6) (3 . 11) (5 . 5) (7 . 8) (8 . 7) (9 . 9) (10 . 10) (11 . 12)) 6.490 {5/15:36} B:2 5.00841 [ 5.00841] ((2 . 6) (3 . 7) (5 . 1) (6 . 11) (8 . 10) (9 . 8) (10 . 9)) 7.547 {5/10:21} B:3 SIMILARITY (1/min{score1}): 0.8079 [and 1/min{score2}: 0.8079] [4419, 5851]: Comparing 1nww_A and 1stf_I, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1stf_I, of which 6 satisfy the size requirements. 2.50038 [ 1.50178] ((2 . 2) (3 . 4) (8 . 6) (9 . 8)) 6.299 {0/3:6} B:0 2.50047 [ 1.50219] ((7 . 4) (8 . 5) (9 . 6) (10 . 8)) 6.641 {0/2:6} B:0 10.00978 [10.00129] ((6 . 4) (7 . 5) (8 . 6) (9 . 8)) 9.354 {2/2:6} B:0 5.01545 [ 5.00209] ((1 . 3) (3 . 4) (5 . 2) (7 . 8) (8 . 6) (9 . 5)) 7.308 {4/8:15} B:3 SIMILARITY (1/min{score1}): 0.3999 [and 1/min{score2}: 0.6659] [4419, 6014]: Comparing 1nww_A and 1ugi_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1ugi_A, of which 7 satisfy the size requirements. 2.50019 [ 1.75056] ((6 . 4) (8 . 5) (9 . 6) (10 . 7)) 5.293 {0/3:6} B:0 2.50029 [ 1.75085] ((7 . 4) (8 . 5) (9 . 6) (10 . 7)) 5.873 {0/2:6} B:0 2.50046 [ 1.75133] ((1 . 1) (7 . 5) (8 . 6) (9 . 7)) 6.575 {0/2:6} B:0 2.50218 [ 1.75633] ((1 . 1) (2 . 3) (6 . 6) (8 . 7)) 9.724 {0/2:6} B:0 3.01565 [ 2.89812] ((5 . 1) (6 . 2) (8 . 4) (9 . 5) (10 . 6)) 8.058 {2/7:10} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.5712] [4419, 6319]: Comparing 1nww_A and 1vqq_A, based on their crossing files. There are 11 (4 H + 7 S) secondary structure elements in 1nww_A, of which 10 satisfy the size requirements. There are 50 (25 H + 25 S) secondary structure elements in 1vqq_A, of which 8 satisfy the size requirements. 2.50162 [ 2.00315] ((1 . 1) (2 . 3) (5 . 4) (7 . 6)) 9.023 {0/3:6} B:0 2.77732 [ 2.74816] ((1 . 1) (2 . 2) (5 . 4) (7 . 5) (8 . 6) (9 . 7) (10 . 8)) 4.892 {3/11:21} B:0 3.38426 [ 3.35448] ((1 . 1) (2 . 2) (5 . 4) (7 . 5) (8 . 6) (9 . 7)) 3.711 {2/6:15} B:0 SIMILARITY (1/min{score1}): 0.3997 [and 1/min{score2}: 0.4992] -------------------------------------------------------------------------------------------------------------------------