------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5821 1sjw_A) ( 574 1cew_I) 0.6000 0.8569 3.4730 ( 0 9 15) 0 0.6000 0.8569 10 7 ( 5821 1sjw_A) ( 1121 1eej_A) nil ( 5821 1sjw_A) ( 1195 1ekm_A) 0.4999 0.8323 5.1116 ( 0 5 10) 0 0.4999 0.8323 10 6 ( 5821 1sjw_A) ( 1196 1ekm_A) 0.5998 0.7493 5.3068 ( 0 10 15) 0 0.5998 0.7493 10 8 ( 5821 1sjw_A) ( 1248 1eqk_A) 0.5999 0.8565 4.3824 ( 0 9 15) 0 0.5999 0.8565 10 7 ( 5821 1sjw_A) ( 2003 1gy7_A) 0.7733 0.7102 4.3217 ( 1 13 28) 0 0.7796 0.7144 10 11 ( 5821 1sjw_A) ( 2228 1hkx_A) 0.5979 0.5979 9.1452 ( 0 6 15) 0 0.5979 0.5979 10 10 ( 5821 1sjw_A) ( 2464 1idp_A) 0.6891 0.6295 5.0918 ( 1 14 21) 0 0.6891 0.6295 10 11 ( 5821 1sjw_A) ( 2563 1iq8_A) 0.5992 0.4997 7.2503 ( 0 7 15) 0 0.5992 0.4997 10 12 ( 5821 1sjw_A) ( 2630 1ivw_A) 0.5998 0.8561 4.9455 ( 0 8 15) 0 0.5998 0.8561 10 7 ( 5821 1sjw_A) ( 2944 1jkg_A) 0.7730 0.7101 4.9579 ( 1 13 28) 0 0.7794 0.7142 10 11 ( 5821 1sjw_A) ( 2945 1jkg_B) 0.5998 0.4615 4.9655 ( 0 6 15) 0 0.7842 0.6110 10 13 ( 5821 1sjw_A) ( 3418 1ksi_A) 0.4999 0.8326 4.6307 ( 0 5 10) 0 0.4999 0.8326 10 6 ( 5821 1sjw_A) ( 3419 1ksi_A) 0.5997 0.9965 5.5251 ( 0 8 15) 0 0.5997 0.9965 10 6 ( 5821 1sjw_A) ( 3888 1m98_A) 0.6472 0.6472 5.1133 ( 1 9 21) 0 0.6472 0.6472 10 10 ( 5821 1sjw_A) ( 3994 1mol_A) 0.4999 0.7139 4.9109 ( 0 6 10) 0 0.4999 0.7139 10 7 ( 5821 1sjw_A) ( 4174 1n9e_A) 0.5000 0.7140 4.4447 ( 0 6 10) 0 0.5000 0.7140 10 7 ( 5821 1sjw_A) ( 4175 1n9e_A) 0.5000 0.6249 3.7172 ( 0 5 10) 0 0.5998 0.7494 10 8 ( 5821 1sjw_A) ( 4328 1nnv_A) 0.4999 0.8322 5.1619 ( 0 5 10) 0 0.4999 0.8322 10 6 ( 5821 1sjw_A) ( 4419 1nww_A) 0.8079 0.8079 2.6183 ( 2 21 36) 0 0.8079 0.8079 10 10 ( 5821 1sjw_A) ( 4543 1o7n_B) 0.5884 0.5285 5.5172 ( 1 7 21) 0 0.6984 0.5827 10 12 ( 5821 1sjw_A) ( 4575 1oac_A) 0.4999 0.8326 4.7073 ( 0 5 10) 0 0.4999 0.8326 10 6 ( 5821 1sjw_A) ( 4576 1oac_A) 0.5998 0.9978 4.9029 ( 0 9 15) 0 0.5998 0.9978 10 6 ( 5821 1sjw_A) ( 4596 1ocv_A) 0.5886 0.5587 2.6750 ( 2 14 21) 0 0.5886 0.5587 10 11 ( 5821 1sjw_A) ( 4621 1of5_B) 0.6726 0.6384 3.7849 ( 2 16 28) 0 0.6726 0.6384 10 11 ( 5821 1sjw_A) ( 4652 1oh0_A) 0.5886 0.6424 2.4930 ( 2 14 21) 0 0.5886 0.6424 10 8 ( 5821 1sjw_A) ( 5199 1q40_A) 0.5995 0.7483 6.5570 ( 0 6 15) 0 0.5995 0.7483 10 8 ( 5821 1sjw_A) ( 5200 1q40_B) 0.7875 0.7875 4.4198 ( 1 16 28) 0 0.7875 0.7875 10 10 ( 5821 1sjw_A) ( 5230 1q7h_A) nil ( 5821 1sjw_A) ( 5769 1s5a_A) 0.5735 0.5630 4.3634 ( 3 18 36) 0 0.5735 0.5630 10 11 ( 5821 1sjw_A) ( 5821 1sjw_A) 1.0000 1.0000 0.0000 ( 0 29 45) 0 1.0000 1.0000 10 10 ( 5821 1sjw_A) ( 5851 1stf_I) 0.3997 0.6628 9.4068 ( 0 3 6) 0 0.3997 0.6628 10 6 ( 5821 1sjw_A) ( 6014 1ugi_A) 0.4997 0.7125 7.0736 ( 0 6 10) 0 0.4997 0.7125 10 7 ( 5821 1sjw_A) ( 6319 1vqq_A) 0.5385 0.6076 5.3234 ( 1 7 15) 0 0.5385 0.6246 10 8 -------------------------------------------------------------------------------------------------------------------------