------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 155 1am7_A) ( 2 153l ) 0.5000 0.5713 4.4859 ( 0 5 6) 0 0.5000 0.5713 8 7 ( 155 1am7_A) ( 155 1am7_A) 1.0000 1.0000 0.0000 ( 0 25 28) 0 1.0000 1.0000 8 8 ( 155 1am7_A) ( 329 1b9o_A) 0.3669 0.3788 9.4087 ( 1 4 6) 0 0.3669 0.3788 8 7 ( 155 1am7_A) ( 591 1chk_A) 0.4976 0.2666 11.9720 ( 0 5 6) 0 0.4976 0.2884 8 15 ( 155 1am7_A) ( 967 1dxj_A) 0.7498 0.5454 3.8222 ( 0 13 15) 0 0.7498 0.5454 8 11 ( 155 1am7_A) ( 3137 1k28_A) 0.5925 0.3317 7.0074 ( 1 9 10) 0 0.5925 0.3317 8 15 ( 155 1am7_A) ( 5080 1pqm_A) 0.5929 0.3814 5.7851 ( 1 9 10) 0 0.5929 0.3814 8 13 ( 155 1am7_A) ( 5323 1qgi_A) 0.4996 0.2667 7.4099 ( 0 4 6) 0 0.6239 0.3333 8 15 ( 155 1am7_A) ( 5442 1qsa_A) 0.6250 0.5000 3.1853 ( 0 9 10) 0 0.6250 0.5000 8 10 ( 155 1am7_A) ( 5462 1qus_A) 0.5774 0.2768 4.0995 ( 1 8 10) 0 0.5774 0.2768 8 18 ( 155 1am7_A) ( 6580 3lzt ) 0.4202 0.4202 8.7731 ( 1 5 6) 0 0.4998 0.4998 8 8 -------------------------------------------------------------------------------------------------------------------------