------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3137 1k28_A) ( 2 153l ) 0.2666 0.5665 12.1575 ( 0 5 6) 0 0.2666 0.5665 15 7 ( 3137 1k28_A) ( 155 1am7_A) 0.3317 0.5925 7.0074 ( 1 9 10) 0 0.3317 0.5925 15 8 ( 3137 1k28_A) ( 329 1b9o_A) 0.3308 0.6310 6.3976 ( 1 8 10) 0 0.3308 0.6310 15 7 ( 3137 1k28_A) ( 591 1chk_A) 0.5390 0.5390 5.6152 ( 5 31 45) 0 0.5390 0.5390 15 15 ( 3137 1k28_A) ( 967 1dxj_A) 0.2869 0.3246 6.0923 ( 2 7 10) 0 0.3021 0.3557 15 11 ( 3137 1k28_A) ( 3137 1k28_A) 1.0000 1.0000 0.0000 ( 0 93 105) 0 1.0000 1.0000 15 15 ( 3137 1k28_A) ( 5080 1pqm_A) 0.7550 0.8395 0.9312 ( 5 56 66) 0 0.7550 0.8429 15 13 ( 3137 1k28_A) ( 5323 1qgi_A) 0.3104 0.3104 4.9401 ( 5 16 28) 0 0.4315 0.4315 15 15 ( 3137 1k28_A) ( 5442 1qsa_A) 0.3590 0.3899 6.5897 ( 4 16 21) 0 0.3590 0.4823 15 10 ( 3137 1k28_A) ( 5462 1qus_A) 0.3119 0.2684 11.3145 ( 2 9 10) 0 0.3119 0.2684 15 18 ( 3137 1k28_A) ( 6580 3lzt ) 0.3333 0.6241 7.1110 ( 0 9 10) 0 0.3333 0.6241 15 8 -------------------------------------------------------------------------------------------------------------------------