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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5080 1pqm_A)  (    2 153l  )     0.2284   0.2477   9.1634 (   2    5    6)   0     0.2284   0.2477   13   7
( 5080 1pqm_A)  (  155 1am7_A)     0.3814   0.5929   5.7851 (   1    9   10)   0     0.3814   0.5929   13   8
( 5080 1pqm_A)  (  329 1b9o_A)     0.3814   0.6558   7.1776 (   1    9   10)   0     0.3814   0.6558   13   7
( 5080 1pqm_A)  (  591 1chk_A)     0.3076   0.2666   9.1522 (   0    4    6)   0     0.3572   0.3360   13  15
( 5080 1pqm_A)  (  967 1dxj_A)     0.3077   0.3636   7.2721 (   0    5    6)   0     0.3796   0.4434   13  11
( 5080 1pqm_A)  ( 3137 1k28_A)     0.8429   0.7317   0.9163 (   2   48   55)   0     0.8429   0.7550   13  15
( 5080 1pqm_A)  ( 5080 1pqm_A)     1.0000   1.0000   0.0000 (   0   66   78)   0     1.0000   1.0000   13  13
( 5080 1pqm_A)  ( 5323 1qgi_A)     0.4351   0.4052   5.8125 (   3   15   21)   0     0.5328   0.4639   13  15
( 5080 1pqm_A)  ( 5442 1qsa_A)     0.4615   0.5998   5.1141 (   0   11   15)   0     0.4751   0.5998   13  10
( 5080 1pqm_A)  ( 5462 1qus_A)     0.3076   0.2222   9.8760 (   0    6    6)   0     0.3762   0.2761   13  18
( 5080 1pqm_A)  ( 6580 3lzt  )     0.3845   0.6240   7.3049 (   0    9   10)   0     0.3845   0.6240   13   8

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