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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5080 1pqm_A) ( 2 153l ) 0.2284 0.2477 9.1634 ( 2 5 6) 0 0.2284 0.2477 13 7
( 5080 1pqm_A) ( 155 1am7_A) 0.3814 0.5929 5.7851 ( 1 9 10) 0 0.3814 0.5929 13 8
( 5080 1pqm_A) ( 329 1b9o_A) 0.3814 0.6558 7.1776 ( 1 9 10) 0 0.3814 0.6558 13 7
( 5080 1pqm_A) ( 591 1chk_A) 0.3076 0.2666 9.1522 ( 0 4 6) 0 0.3572 0.3360 13 15
( 5080 1pqm_A) ( 967 1dxj_A) 0.3077 0.3636 7.2721 ( 0 5 6) 0 0.3796 0.4434 13 11
( 5080 1pqm_A) ( 3137 1k28_A) 0.8429 0.7317 0.9163 ( 2 48 55) 0 0.8429 0.7550 13 15
( 5080 1pqm_A) ( 5080 1pqm_A) 1.0000 1.0000 0.0000 ( 0 66 78) 0 1.0000 1.0000 13 13
( 5080 1pqm_A) ( 5323 1qgi_A) 0.4351 0.4052 5.8125 ( 3 15 21) 0 0.5328 0.4639 13 15
( 5080 1pqm_A) ( 5442 1qsa_A) 0.4615 0.5998 5.1141 ( 0 11 15) 0 0.4751 0.5998 13 10
( 5080 1pqm_A) ( 5462 1qus_A) 0.3076 0.2222 9.8760 ( 0 6 6) 0 0.3762 0.2761 13 18
( 5080 1pqm_A) ( 6580 3lzt ) 0.3845 0.6240 7.3049 ( 0 9 10) 0 0.3845 0.6240 13 8
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