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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5442 1qsa_A)  (    2 153l  )     0.5000   0.7143   2.5579 (   0    9   10)   0     0.5178   0.7143   10   7
( 5442 1qsa_A)  (  155 1am7_A)     0.5000   0.6250   3.1853 (   0    9   10)   0     0.5000   0.6250   10   8
( 5442 1qsa_A)  (  329 1b9o_A)     0.3824   0.4918   2.6477 (   1    6    6)   0     0.3824   0.4918   10   7
( 5442 1qsa_A)  (  591 1chk_A)     0.6076   0.4506   5.1898 (   2   15   21)   0     0.6076   0.4506   10  15
( 5442 1qsa_A)  (  967 1dxj_A)     0.6998   0.6362   4.2188 (   0   20   21)   0     0.7994   0.7269   10  11
( 5442 1qsa_A)  ( 3137 1k28_A)     0.4823   0.3308   7.1219 (   1    8   10)   0     0.4823   0.3308   10  15
( 5442 1qsa_A)  ( 5080 1pqm_A)     0.5998   0.4615   5.1141 (   0   11   15)   0     0.5998   0.4751   10  13
( 5442 1qsa_A)  ( 5323 1qgi_A)     0.6987   0.4665   6.6691 (   0   15   21)   0     0.6987   0.4665   10  15
( 5442 1qsa_A)  ( 5442 1qsa_A)     1.0000   1.0000   0.0000 (   0   40   45)   0     1.0000   1.0000   10  10
( 5442 1qsa_A)  ( 5462 1qus_A)     0.5910   0.3328   2.8873 (   1   12   15)   0     0.5910   0.3328   10  18
( 5442 1qsa_A)  ( 6580 3lzt  )     0.4924   0.6031   4.5856 (   1   10   10)   0     0.4924   0.6031   10   8

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