------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5462 1qus_A) ( 2 153l ) 0.3333 0.8559 5.1851 ( 0 14 15) 0 0.3333 0.8559 18 7 ( 5462 1qus_A) ( 155 1am7_A) 0.2768 0.5774 4.0995 ( 1 8 10) 0 0.2768 0.5774 18 8 ( 5462 1qus_A) ( 329 1b9o_A) 0.2172 0.3789 8.7448 ( 1 4 6) 0 0.2172 0.3789 18 7 ( 5462 1qus_A) ( 591 1chk_A) 0.2222 0.2666 8.3756 ( 0 2 6) 0 0.2777 0.3333 18 15 ( 5462 1qus_A) ( 967 1dxj_A) 0.2663 0.2806 5.7712 ( 6 17 21) 0 0.3333 0.5450 18 11 ( 5462 1qus_A) ( 3137 1k28_A) 0.2684 0.3119 11.3145 ( 2 9 10) 0 0.2684 0.3119 18 15 ( 5462 1qus_A) ( 5080 1pqm_A) 0.2222 0.3076 9.8760 ( 0 6 6) 0 0.2761 0.3762 18 13 ( 5462 1qus_A) ( 5323 1qgi_A) 0.2222 0.2667 7.0132 ( 0 5 6) 0 0.3326 0.3982 18 15 ( 5462 1qus_A) ( 5442 1qsa_A) 0.3328 0.5910 2.8873 ( 1 12 15) 0 0.3328 0.5910 18 10 ( 5462 1qus_A) ( 5462 1qus_A) 1.0000 1.0000 0.0000 ( 0 136 153) 0 1.0000 1.0000 18 18 ( 5462 1qus_A) ( 6580 3lzt ) 0.2222 0.4994 8.5568 ( 0 5 6) 0 0.2222 0.4994 18 8 -------------------------------------------------------------------------------------------------------------------------