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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  591 1chk_A)  (    2 153l  )     0.2614   0.4437  12.8996 (   1    5    6)   0     0.3333   0.7127   15   7
(  591 1chk_A)  (  155 1am7_A)     0.2884   0.2990   6.8521 (   5   15   21)   0     0.2884   0.4976   15   8
(  591 1chk_A)  (  329 1b9o_A)     0.2667   0.5709   7.0102 (   0    2    6)   0     0.2667   0.5709   15   7
(  591 1chk_A)  (  591 1chk_A)     1.0000   1.0000   0.0000 (   0   81  105)   0     1.0000   1.0000   15  15
(  591 1chk_A)  (  967 1dxj_A)     0.3490   0.3985   4.2386 (   3   13   15)   0     0.3823   0.4787   15  11
(  591 1chk_A)  ( 3137 1k28_A)     0.5390   0.5390   5.6152 (   5   31   45)   0     0.5390   0.5390   15  15
(  591 1chk_A)  ( 5080 1pqm_A)     0.2666   0.3076   9.1522 (   0    4    6)   0     0.3360   0.3572   15  13
(  591 1chk_A)  ( 5323 1qgi_A)     0.6433   0.6433   3.5077 (   3   32   45)   0     0.6433   0.6433   15  15
(  591 1chk_A)  ( 5442 1qsa_A)     0.4506   0.6076   5.1898 (   2   15   21)   0     0.4506   0.6076   15  10
(  591 1chk_A)  ( 5462 1qus_A)     0.2666   0.2222   8.3756 (   0    2    6)   0     0.3333   0.2777   15  18
(  591 1chk_A)  ( 6580 3lzt  )     0.3987   0.7228   6.0615 (   1   12   15)   0     0.3987   0.7228   15   8

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