------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6580 3lzt ) ( 2 153l ) 0.5000 0.5713 4.3819 ( 0 6 6) 0 0.5000 0.5713 8 7 ( 6580 3lzt ) ( 155 1am7_A) 0.4202 0.4202 8.7731 ( 1 5 6) 0 0.4998 0.4998 8 8 ( 6580 3lzt ) ( 329 1b9o_A) 0.7353 0.8294 1.0258 ( 1 14 15) 0 0.7353 0.8294 8 7 ( 6580 3lzt ) ( 591 1chk_A) 0.7228 0.3987 6.0615 ( 1 12 15) 0 0.7228 0.3987 8 15 ( 6580 3lzt ) ( 967 1dxj_A) 0.4994 0.3635 8.2962 ( 0 6 6) 0 0.4999 0.3636 8 11 ( 6580 3lzt ) ( 3137 1k28_A) 0.6241 0.3333 7.1110 ( 0 9 10) 0 0.6241 0.3333 8 15 ( 6580 3lzt ) ( 5080 1pqm_A) 0.6240 0.3845 7.3049 ( 0 9 10) 0 0.6240 0.3845 8 13 ( 6580 3lzt ) ( 5323 1qgi_A) 0.4996 0.2666 7.6096 ( 0 3 6) 0 0.4996 0.3121 8 15 ( 6580 3lzt ) ( 5442 1qsa_A) 0.6031 0.4924 4.5856 ( 1 10 10) 0 0.6031 0.4924 8 10 ( 6580 3lzt ) ( 5462 1qus_A) 0.4994 0.2222 8.5568 ( 0 5 6) 0 0.4994 0.2222 8 18 ( 6580 3lzt ) ( 6580 3lzt ) 1.0000 1.0000 0.0000 ( 0 27 28) 0 1.0000 1.0000 8 8 -------------------------------------------------------------------------------------------------------------------------