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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5778 1s7j_A)  ( 1920 1gqz_A)     0.4091   0.9998   2.8177 (   0   29   36)   0     0.4091   0.9998   22   9
( 5778 1s7j_A)  ( 1921 1gqz_A)     0.4541   0.8947   3.1644 (   2   36   45)   0     0.4542   0.8984   22  11
( 5778 1s7j_A)  ( 5778 1s7j_A)     1.0000   1.0000   0.0000 (   0  205  231)   0     1.0000   1.0000   22  22
( 5778 1s7j_A)  ( 5793 1sdj_A)     0.4091   0.8999   2.4131 (   0   31   36)   0     0.4091   0.8999   22  10
( 5778 1s7j_A)  ( 5794 1sdj_A)     0.5000   0.9987   4.3124 (   0   43   55)   0     0.5000   0.9987   22  11

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