------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5778 1s7j_A) ( 1920 1gqz_A) 0.4091 0.9998 2.8177 ( 0 29 36) 0 0.4091 0.9998 22 9 ( 5778 1s7j_A) ( 1921 1gqz_A) 0.4541 0.8947 3.1644 ( 2 36 45) 0 0.4542 0.8984 22 11 ( 5778 1s7j_A) ( 5778 1s7j_A) 1.0000 1.0000 0.0000 ( 0 205 231) 0 1.0000 1.0000 22 22 ( 5778 1s7j_A) ( 5793 1sdj_A) 0.4091 0.8999 2.4131 ( 0 31 36) 0 0.4091 0.8999 22 10 ( 5778 1s7j_A) ( 5794 1sdj_A) 0.5000 0.9987 4.3124 ( 0 43 55) 0 0.5000 0.9987 22 11 -------------------------------------------------------------------------------------------------------------------------