-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 2980 1jms_A)  ( 1399 1f5a_A)     0.6093   0.6372   4.9677 (   3   23   36)   0     0.6093   0.6372   13  12
( 2980 1jms_A)  ( 2782 1jaj_A)     0.8400   0.7101   4.8930 (   5   50   78)   0     0.8400   0.7101   13  17
( 2980 1jms_A)  ( 2980 1jms_A)     1.0000   1.0000   0.0000 (   0   53   78)   0     1.0000   1.0000   13  13
( 2980 1jms_A)  ( 2990 1jn3_A)     0.9942   0.9942   3.1320 (   2   52   78)   0     0.9942   0.9942   13  13
( 2980 1jms_A)  ( 3370 1kny_A)     0.3846   0.5000   3.3401 (   0    6   10)   0     0.5275   0.6626   13  10
( 2980 1jms_A)  ( 3938 1miw_A)     0.6743   0.8400   3.5018 (   2   24   36)   0     0.6743   0.8400   13  10
( 2980 1jms_A)  ( 4332 1no5_A)     0.3568   0.4589   3.0983 (   1    5   10)   0     0.3568   0.4589   13   8
( 2980 1jms_A)  ( 4788 1ou5_A)     0.3077   0.4444   5.9236 (   0    5    6)   0     0.3077   0.4444   13   9
( 2980 1jms_A)  ( 5141 1px5_A)     0.6151   0.6663   5.3494 (   0   18   28)   0     0.6151   0.6663   13  12
( 2980 1jms_A)  ( 5589 1r89_A)     0.6132   0.7921   3.9840 (   1   18   28)   0     0.6132   0.7921   13  10
( 2980 1jms_A)  ( 5740 1rzt_A)     0.9156   0.7963   3.7246 (   2   44   66)   0     0.9156   0.7963   13  15
( 2980 1jms_A)  ( 6281 1vj7_A)     0.4615   0.6000   3.2005 (   0    8   15)   0     0.4615   0.6000   13  10
( 2980 1jms_A)  ( 6336 1wot_A)     0.3846   0.8317   5.6923 (   0    7   10)   0     0.3846   0.8317   13   6

-------------------------------------------------------------------------------------------------------------------------